SMTL ID : 4hgm.1

Shark IgNAR Variable Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain B: Y.150, L.238, H.242, R.257, A.291 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.150, B:Y.150, B:R.257

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.2: 8 residues within 4Å: Chain B: A.26, L.66, F.70, G.248, D.249, L.250, L.251, E.252 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.26, B:F.70 Hydrogen bonds: B:L.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kovalenko, O.V. et al., Atypical Antigen Recognition Mode of a Shark Immunoglobulin New Antigen Receptor (IgNAR) Variable Domain Characterized by Humanization and Structural Analysis. J.Biol.Chem. (2013)

Release Date

2013-05-08

Peptides

Shark V-NAR: A
Serum albumin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Shark V-NAR

Serum albumin

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