SMTL ID : 1s8d.1

Structural basis for degenerate recognition of HIV peptide variants by cytotoxic lymphocyte, variant SL9-3A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- LEU- ALA- ASN- THR- VAL- ALA- THR- LEU: gag peptide(Non-covalent)

SER-LEU-ALA-ASN-THR-VAL-ALA-THR-LEU.1: 25 residues within 4Å: Chain A: M.5, Y.7, F.9, M.45, E.63, R.65, K.66, V.67, H.70, T.73, V.76, D.77, T.80, L.81, Y.84, R.97, Y.99, Y.116, Y.123, T.143, K.146, W.147, Y.159, W.167, Y.171 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.7, A:F.9, A:V.67, A:V.76, A:D.77, A:L.81, A:Y.116, A:Y.116, A:Y.123, A:W.147 Hydrogen bonds: A:Y.7, A:E.63, A:R.65, A:R.65, A:T.73, A:D.77, A:Y.84, A:Y.99, A:Y.171, A:Y.171 Water bridges: A:K.66, A:D.77, A:D.77, A:R.97, A:R.97, A:R.97 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Hackert, E. et al., Structural Basis for Degenerate Recognition of Natural HIV Peptide Variants by Cytotoxic Lymphocytes. J.Biol.Chem. (2006)

Release Date

2005-09-06

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

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