SMTL ID : 1vgk.1

The crystal structure of class I Major histocompatibility complex, H-2Kd at 2.0 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SER- TYR- VAL- ASN- THR- ASN- MET- GLY- LEU: syvntnmgl(Non-covalent)

SER-TYR-VAL-ASN-THR-ASN-MET-GLY-LEU.1: 31 residues within 4Å: Chain A: L.5, Y.7, V.9, F.22, A.24, F.45, Y.59, Q.63, R.66, S.69, D.70, W.73, S.77, T.80, Y.84, F.95, R.97, F.99, F.116, Y.123, T.143, K.146, W.147, A.150, D.152, Y.155, Y.156, Y.159, E.163, W.167, Y.171 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:A.24, A:F.45, A:R.66, A:D.70, A:W.73, A:F.99, A:Y.123, A:Y.159, A:Y.159, A:Y.159 Hydrogen bonds: A:Q.63, A:Q.63, A:Q.63, A:R.66, A:D.70, A:R.97, A:R.97, A:T.143, A:K.146, A:Y.155, A:Y.156, A:Y.156, A:Y.159, A:Y.171 Water bridges: A:Q.65, A:R.66, A:R.66, A:S.69, A:W.73, A:S.77 Salt bridges: A:K.146 pi-Stacking: A:Y.7, A:F.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, M. et al., The crystal structure of class I major histocompatibility complex, H-2Kd at 2.0 A resolution. To be Published

Release Date

2005-06-28

Peptides

H-2 class I histocompatibility antigen, K-D alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, K-D alpha chain

Beta-2-microglobulin

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