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SMTL ID : 4uz1.1

STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM III - 1.4A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1:

4 residues within 4Å:

Chain A: N.19, S.21, V.22, M.126

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:N.19
Water bridges: A:R.136, A:R.136

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	3 residues within 4Å: Chain A: R.332, H.335, R.339 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.339 Salt bridges: A:R.332, A:H.335, A:R.339
SO4.3:	5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:N.121, A:Y.123 Salt bridges: A:R.56
SO4.4:	6 residues within 4Å: Chain A: R.167, E.170, V.225, P.226, E.227, R.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.227 Salt bridges: A:R.167, A:R.230
SO4.5:	3 residues within 4Å: Chain A: R.228, R.231, R.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.231, A:R.252 Water bridges: A:E.227 Salt bridges: A:R.228

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kakugawa, S. et al., Notum Deacylates Wnt Proteins to Suppress Signalling Activity. Nature (2015)

Release Date

2015-02-25

Peptides

NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

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3D Viewer
NGLPV2D

NOTUM

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4uyu.1 | 4uyu.2 | 4uyw.1 | 4uyw.2 | 4uz5.1 | 4uz6.1 | 4uz6.2 | 4uz7.1 | 4uz7.2 | 4uz9.1 | 6r8p.1 | 6r8q.1 | 6r8r.1 | 6t2h.1 | 6t2k.1 | 6tr5.1 | 6tr6.1 | 6tr7.1 | 6tuz.1 | 6tv4.1 | 6ysk.1 | 6yuw.1 | 6yuy.1 | 6yv0.1 | 6yv2.1 | 6yv4.1 | 6yxi.1 | 6zuv.1 | 6zvl.1 | 7arg.1 more...less...

7b2v.1 | 7b2y.1 | 7b2z.1 | 7b37.1 | 7b3g.1 | 7b3h.1 | 7b3i.1 | 7b3p.1 | 7b3x.1 | 7b45.1 | 7b4x.1 | 7b50.1 | 7b7w.1 | 7b7x.1 | 7b7y.1 | 7b84.1 | 7b86.1 | 7b87.1 | 7b89.1 | 7b8a.1 | 7b8c.1 | 7b8d.1 | 7b8f.1 | 7b8g.1 | 7b8j.1 | 7b8k.1 | 7b8l.1 | 7b8m.1 | 7b8n.1 | 7b8o.1 | 7b8u.1 | 7b8x.1 | 7b8y.1 | 7b8z.1 | 7b98.1 | 7b99.1 | 7b9d.1 | 7b9i.1 | 7b9n.1 | 7b9u.1 | 7ba1.1 | 7bac.1 | 7bap.1 | 7bc8.1 | 7bc9.1 | 7bcc.1 | 7bcd.1 | 7bcf.1 | 7bch.1 | 7bci.1 | 7bck.1 | 7bcl.1 | 7bd2.1 | 7bd3.1 | 7bd4.1 | 7bd5.1 | 7bd6.1 | 7bd8.1 | 7bd9.1 | 7bda.1 | 7bdb.1 | 7bdc.1 | 7bdd.1 | 7bdf.1 | 7bdg.1 | 7bdh.1 | 7bli.1 | 7bls.1 | 7blt.1 | 7blu.1 | 7blw.1 | 7bm1.1 | 7bm3.1 | 7bm7.1 | 7bmb.1 | 7bmd.1 | 7bn5.1 | 7bn8.1 | 7bnb.1 | 7bnc.1 | 7bnd.1 | 7bne.1 | 7bnf.1 | 7bnj.1 | 7bnl.1 | 7pjr.1 | 7pk3.1 | 7pkv.1 | 7qvz.1 | 8bsp.1 | 8bsq.1 | 8bsr.1 | 8bsz.1 | 8bt0.1 | 8bt2.1 | 8bt5.1 | 8bt7.1 | 8bt8.1 | 8bta.1 | 8btc.1 | 8bte.1 | 8bth.1 | 8bti.1

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