- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.24 Å
- Oligo State
- monomer
- Ligands
- 5 x SO4: SULFATE ION(Non-functional Binders)
SO4.1: 4 residues within 4Å:- Chain A: T.65, M.66, R.67, R.68
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.67, A:R.68
- Water bridges: A:D.74
- Salt bridges: A:R.68
SO4.2: 4 residues within 4Å:- Chain A: V.279, Q.280, E.281, R.284
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.281
- Salt bridges: A:R.284
SO4.3: 5 residues within 4Å:- Chain A: R.167, E.170, V.225, E.227, R.230
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.227
- Salt bridges: A:R.167, A:R.230
SO4.4: 2 residues within 4Å:- Chain A: Q.132
- Ligands: NAG.30
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.132, A:Q.132
SO4.5: 5 residues within 4Å:- Chain A: R.56, K.120, N.121, E.122, Y.220
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.122
- Water bridges: A:R.56, A:Y.123
- Salt bridges: A:R.56
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.6: 6 residues within 4Å:- Chain A: E.264, L.310, S.311, H.312, E.313, P.373
3 PLIP interactions:3 interactions with chain A- Salt bridges: A:E.264, A:E.313
- pi-Cation interactions: A:H.312
DMS.7: 3 residues within 4Å:- Chain A: P.356, V.357, H.358
No protein-ligand interaction detected (PLIP)DMS.8: 3 residues within 4Å:- Chain A: Y.197, R.198, L.283
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.198, A:R.198
- Water bridges: A:Y.197
DMS.9: 2 residues within 4Å:- Chain A: Q.234, E.235
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.235
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 6 residues within 4Å:- Chain A: R.13, L.34, K.35, E.36, R.38, R.141
Ligand excluded by PLIPEDO.11: 5 residues within 4Å:- Chain A: Y.248, L.251, S.253, P.254, V.255
Ligand excluded by PLIPEDO.12: 4 residues within 4Å:- Chain A: S.40, R.41, R.42, K.147
Ligand excluded by PLIPEDO.13: 5 residues within 4Å:- Chain A: Y.33, W.75, P.76, R.79, P.104
Ligand excluded by PLIPEDO.14: 5 residues within 4Å:- Chain A: R.42, Y.94, W.95, W.96, N.97
Ligand excluded by PLIPEDO.15: 2 residues within 4Å:- Chain A: R.339, H.342
Ligand excluded by PLIPEDO.16: 3 residues within 4Å:- Chain A: R.13, H.15, R.141
Ligand excluded by PLIPEDO.17: 7 residues within 4Å:- Chain A: R.79, T.80, G.81, T.82, L.85, F.102, I.316
Ligand excluded by PLIPEDO.18: 4 residues within 4Å:- Chain A: D.26, K.117, E.122, Y.123
Ligand excluded by PLIPEDO.19: 2 residues within 4Å:- Chain A: H.296, K.299
Ligand excluded by PLIPEDO.20: 6 residues within 4Å:- Chain A: N.194, K.195, Y.286, N.289, L.290, E.293
Ligand excluded by PLIPEDO.21: 1 residues within 4Å:- Chain A: E.237
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain A: R.42, Y.94, H.335, D.338
Ligand excluded by PLIPEDO.23: 4 residues within 4Å:- Chain A: D.193, N.194, Y.245, E.293
Ligand excluded by PLIPEDO.24: 7 residues within 4Å:- Chain A: L.192, D.193, N.194, Q.196, P.210, V.269, D.270
Ligand excluded by PLIPEDO.25: 6 residues within 4Å:- Chain A: W.260, I.315, R.317, W.320, V.323, L.330
Ligand excluded by PLIPEDO.26: 5 residues within 4Å:- Chain A: Y.245, Y.248, P.249, T.297, V.301
Ligand excluded by PLIPEDO.27: 2 residues within 4Å:- Chain A: W.51, M.66
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain A: E.313, R.317, S.318, H.319
Ligand excluded by PLIPEDO.29: 6 residues within 4Å:- Chain A: G.50, W.51, S.155, A.156, A.265
- Ligands: TEP.31
Ligand excluded by PLIP- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.30: 4 residues within 4Å:- Chain A: N.19, V.22, Q.132
- Ligands: SO4.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.132
- 1 x TEP: THEOPHYLLINE(Non-covalent)
TEP.31: 10 residues within 4Å:- Chain A: W.51, Y.52, V.110, T.159, F.191, P.210, I.214, F.242, F.243
- Ligands: EDO.29
1 PLIP interactions:1 interactions with chain A- pi-Stacking: A:F.191
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, Y. et al., Caffeine inhibits Notum activity by binding at the catalytic pocket. Commun Biol (2020)
- Release Date
- 2020-10-28
- Peptides
- Palmitoleoyl-protein carboxylesterase NOTUM: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
SMTL ID : 6tuz.1
Theophylline-Notum complex
Palmitoleoyl-protein carboxylesterase NOTUM
Related Entries With Identical Sequence
4uyu.1 | 4uyu.2 | 4uyw.1 | 4uyw.2 | 4uz1.1 | 4uz5.1 | 4uz6.1 | 4uz6.2 | 4uz7.1 | 4uz7.2 | 4uz9.1 | 6r8p.1 | 6r8q.1 | 6r8r.1 | 6t2h.1 | 6t2k.1 | 6tr5.1 | 6tr6.1 | 6tr7.1 | 6tv4.1 | 6ysk.1 | 6yuw.1 | 6yuy.1 | 6yv0.1 | 6yv2.1 | 6yv4.1 | 6yxi.1 | 6zuv.1 | 6zvl.1 | 7arg.1 more...less...7b2v.1 | 7b2y.1 | 7b2z.1 | 7b37.1 | 7b3g.1 | 7b3h.1 | 7b3i.1 | 7b3p.1 | 7b3x.1 | 7b45.1 | 7b4x.1 | 7b50.1 | 7b7w.1 | 7b7x.1 | 7b7y.1 | 7b84.1 | 7b86.1 | 7b87.1 | 7b89.1 | 7b8a.1 | 7b8c.1 | 7b8d.1 | 7b8f.1 | 7b8g.1 | 7b8j.1 | 7b8k.1 | 7b8l.1 | 7b8m.1 | 7b8n.1 | 7b8o.1 | 7b8u.1 | 7b8x.1 | 7b8y.1 | 7b8z.1 | 7b98.1 | 7b99.1 | 7b9d.1 | 7b9i.1 | 7b9n.1 | 7b9u.1 | 7ba1.1 | 7bac.1 | 7bap.1 | 7bc8.1 | 7bc9.1 | 7bcc.1 | 7bcd.1 | 7bcf.1 | 7bch.1 | 7bci.1 | 7bck.1 | 7bcl.1 | 7bd2.1 | 7bd3.1 | 7bd4.1 | 7bd5.1 | 7bd6.1 | 7bd8.1 | 7bd9.1 | 7bda.1 | 7bdb.1 | 7bdc.1 | 7bdd.1 | 7bdf.1 | 7bdg.1 | 7bdh.1 | 7bli.1 | 7bls.1 | 7blt.1 | 7blu.1 | 7blw.1 | 7bm1.1 | 7bm3.1 | 7bm7.1 | 7bmb.1 | 7bmd.1 | 7bn5.1 | 7bn8.1 | 7bnb.1 | 7bnc.1 | 7bnd.1 | 7bne.1 | 7bnf.1 | 7bnj.1 | 7bnl.1 | 7pjr.1 | 7pk3.1 | 7pkv.1 | 7qvz.1 | 8bsp.1 | 8bsq.1 | 8bsr.1 | 8bsz.1 | 8bt0.1 | 8bt2.1 | 8bt5.1 | 8bt7.1 | 8bt8.1 | 8bta.1 | 8btc.1 | 8bte.1 | 8bth.1 | 8bti.1