SMTL ID : 7bd6.1

Notum Fragment 863

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.6: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Salt bridges: A:R.56 SO4.7: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19 Water bridges: A:E.133

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.255 DMS.4: 8 residues within 4Å: Chain A: Y.33, E.48, R.68, W.75, P.76, R.79, F.102, P.104 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79 Water bridges: A:R.68 Salt bridges: A:E.48 pi-Cation interactions: A:W.75 DMS.5: 6 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97, A.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.42, A:R.42, A:N.97 pi-Cation interactions: A:W.96

1 x JH7: 1-methyl-5-(phenylamino)-1,2-dihydro-3H-pyrazol-3-one(Non-covalent)

JH7.8: 11 residues within 4Å: Chain A: W.51, Y.52, S.155, A.156, T.159, S.188, F.191, P.210, F.242, F.243, A.265 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.159, A:F.191, A:F.191, A:P.210, A:F.243 Hydrogen bonds: A:T.159 Water bridges: A:W.51, A:A.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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