SMTL ID : 7b7w.1

Notum-Fragment049

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, E.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:E.133

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: L.175, G.176, Y.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.176 EDO.5: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.248, A:R.252, A:V.255 EDO.6: 7 residues within 4Å: Chain A: L.192, D.193, N.194, Q.196, A.209, P.210, T.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.194, A:T.211, A:T.211

1 x JGA: N-ethyl-N'-(5-methyl-1,2-oxazol-3-yl)urea(Non-covalent)

JGA.7: 7 residues within 4Å: Chain A: W.51, Y.52, A.156, T.159, F.191, A.265, V.269 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.191 Hydrogen bonds: A:W.51 pi-Stacking: A:Y.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Fragment Screen. To Be Published

Release Date

2021-07-21

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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