SMTL ID : 6yuy.1

STRUCTURE OF THE WNT DEACYLASE NOTUM IN COMPLEX WITH A PYRROLE-3-CARBOXYLIC ACID FRAGMENT 471

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.167, E.170, V.225, E.227, R.230 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 Ligand excluded by PLIP SO4.3: 6 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: R.13, H.15, R.141 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain A: Y.33, E.48, W.75, P.76, R.79, F.102, P.104 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: R.295, H.296, K.299 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain A: G.39, S.40, R.41, R.42, K.147 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: R.13, K.35, E.36, R.38 Ligand excluded by PLIP SO4.10: 1 residues within 4Å: Chain A: R.77 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain A: R.339, H.342 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain A: H.273, I.287, L.310 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain A: S.340, L.341, H.342 Ligands: SO4.15 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain A: T.350 Ligands: SO4.14 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain A: Q.234, E.235 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.17: 5 residues within 4Å: Chain A: Y.248, L.251, S.253, P.254, V.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.255

1 x PQH: 2-methyl-5-(trifluoromethyl)-1~{H}-pyrrole-3-carboxylic acid(Non-covalent)

PQH.18: 11 residues within 4Å: Chain A: W.51, Y.52, V.110, S.155, A.156, T.159, F.191, I.214, F.242, A.265, V.269 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.156, A:F.191 Hydrogen bonds: A:Y.52, A:T.159 pi-Stacking: A:Y.52, A:F.191 Halogen bonds: A:T.159

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.19: 2 residues within 4Å: Chain A: N.19, V.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahy, W. et al., Screening of a Custom-Designed Acid Fragment Library Identifies 1-Phenylpyrroles and 1-Phenylpyrrolidines as Inhibitors of Notum Carboxylesterase Activity. J.Med.Chem. (2020)

Release Date

2020-05-06

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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