SMTL ID : 7bac.1

Notum Fragment 646

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.4: 2 residues within 4Å: Chain A: K.326, V.360 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:K.326, A:V.360 Salt bridges: A:K.326 SO4.5: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.6: 5 residues within 4Å: Chain A: P.93, Y.94, W.95, W.96, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97 SO4.7: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, L.129 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.19, A:E.133, A:R.136

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: L.192, D.193, N.194, Q.196, A.209, P.210, T.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.194

2 x LO5: 1-(1,3-benzodioxol-5-yl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine(Non-covalent)

LO5.8: 8 residues within 4Å: Chain A: W.51, Y.52, F.191, P.210, I.214, F.242, F.243, V.269 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.51 pi-Stacking: A:Y.52, A:F.191 LO5.9: 7 residues within 4Å: Chain A: D.26, S.28, Y.63, R.73, K.117, E.122, Y.123 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.26, A:Y.63, A:R.73 Hydrogen bonds: A:K.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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