SMTL ID : 7b8c.1

Notum-Fragment 147

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.4: 3 residues within 4Å: Chain A: R.295, K.326, V.360 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.326, A:H.358, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.5: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:K.120, A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.6: 6 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97 Salt bridges: A:R.42 SO4.7: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.197, A:P.278 Salt bridges: A:R.198 SO4.8: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141 SO4.9: 4 residues within 4Å: Chain A: R.167, E.170, V.225, E.227 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.227, A:E.227, A:E.227 Salt bridges: A:R.167

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: L.192, D.193, N.194, Q.196, A.209, P.210, T.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.194

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.10: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.248, A:R.252, A:V.255

1 x GRV: 2-methyl-~{N}-(2-methylpropyl)imidazo[1,2-a]pyridine-3-carboxamide(Non-covalent)

GRV.11: 9 residues within 4Å: Chain A: W.51, Y.52, A.156, T.159, F.191, I.214, F.242, A.265, V.269 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.52, A:A.156, A:F.191, A:I.214, A:F.242, A:A.265 Hydrogen bonds: A:W.51, A:Y.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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