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SMTL ID : 7b8j.1

Notum-Fragment 163

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68
SO4.4:	2 residues within 4Å: Chain A: K.326, V.360 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:K.326, A:V.360 Salt bridges: A:K.326
SO4.5:	5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:Y.123, A:Y.123 Salt bridges: A:R.56
SO4.6:	5 residues within 4Å: Chain A: P.93, Y.94, W.95, W.96, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97
SO4.7:	2 residues within 4Å: Chain A: Y.197, R.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.197 Salt bridges: A:R.198

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2:

2 residues within 4Å:

Chain A: N.19, V.22

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.19

1 x BP4: biphenyl-4-ylacetic acid(Non-covalent)

BP4.3:

12 residues within 4Å:

Chain A: G.50, W.51, Y.52, V.110, S.155, A.156, T.159, F.191, I.214, F.242, A.265, H.312

15 PLIP interactions:

15 interactions with chain A

Hydrophobic interactions: A:V.110, A:T.159, A:F.191, A:F.191, A:F.191, A:I.214, A:F.242, A:F.242, A:A.265
Hydrogen bonds: A:G.50, A:W.51, A:S.155, A:A.156
Salt bridges: A:H.312
pi-Stacking: A:W.51

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

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3D Viewer
NGLPV2D

Palmitoleoyl-protein carboxylesterase NOTUM

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