SMTL ID : 7pkv.1

Notum_Inhibitor ARUK3000223

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.332, H.335, R.339 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.332, A:H.335, A:R.339 SO4.2: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.120, A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.3: 5 residues within 4Å: Chain A: R.167, E.170, V.225, E.227, R.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.227 Salt bridges: A:R.167, A:R.230 SO4.4: 3 residues within 4Å: Chain A: R.228, R.231, R.252 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.231, A:R.252 Salt bridges: A:R.228 SO4.8: 6 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.94, A:W.96, A:W.96, A:N.97 Salt bridges: A:R.42 SO4.9: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.197 Salt bridges: A:R.198

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: N.19, S.21, V.22, M.126 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.19

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.248, A:V.255

1 x 63Z: [1-[4-chloranyl-3-(trifluoromethyl)phenyl]-1,2,3-triazol-4-yl]methanol(Non-covalent)

63Z.7: 14 residues within 4Å: Chain A: G.50, W.51, Y.52, S.155, A.156, T.159, F.191, P.210, I.214, F.242, F.243, A.265, V.269, H.312 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.52 Hydrogen bonds: A:G.50, A:W.51, A:S.155, A:A.156, A:H.312 pi-Stacking: A:W.51, A:F.191 Halogen bonds: A:P.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willis, N.J. et al., Design of a Potent, Selective, and Brain-Penetrant Inhibitor of Wnt-Deactivating Enzyme Notum by Optimization of a Crystallographic Fragment Hit. J.Med.Chem. (2022)

Release Date

2022-09-07

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

Related Entries With Identical Sequence