SMTL ID : 7b8z.1

Notum-Fragment 277

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Salt bridges: A:R.68 SO4.4: 3 residues within 4Å: Chain A: R.295, K.326, V.360 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.5: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.6: 7 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97, A.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.42, A:P.93, A:W.96, A:N.97 SO4.7: 2 residues within 4Å: Chain A: Y.197, R.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.197 Water bridges: A:Y.197 Salt bridges: A:R.198 SO4.8: 3 residues within 4Å: Chain A: Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284 SO4.9: 2 residues within 4Å: Chain A: H.15, R.141 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.15, A:R.141

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.19, V.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 7 residues within 4Å: Chain A: Y.52, T.159, F.191, I.214, F.242, F.243 Ligands: A6Z.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.52

1 x A6Z: 2-[4-(3-chlorophenyl)piperazin-1-ium-1-yl]ethanenitrile(Non-covalent)

A6Z.10: 11 residues within 4Å: Chain A: W.51, Y.52, A.156, F.191, L.192, P.210, T.211, F.243, Q.266, V.269 Ligands: DMS.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.191, A:F.243, A:V.269, A:V.269 Halogen bonds: A:T.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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