SMTL ID : 7b89.1

Notum-Fragment077

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.65, A:R.67, A:R.68 Salt bridges: A:R.68 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.5: 5 residues within 4Å: Chain A: Y.94, W.95, W.96, N.97, A.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.19, V.22, L.129, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:E.133

1 x T1Z: [1-(3,4-dichlorophenyl)-1,2,3-triazol-4-yl]methanol(Non-covalent)

T1Z.3: 9 residues within 4Å: Chain A: W.51, S.155, A.156, T.159, F.191, P.210, F.242, F.243, A.265 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.51, A:S.155, A:A.156 pi-Stacking: A:W.51, A:F.191

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: L.175, G.176, Y.177 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain A: Y.197, R.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.197, A:R.198, A:R.198 EDO.8: 4 residues within 4Å: Chain A: R.13, L.34, K.35, E.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.13, A:E.36, A:E.36 EDO.9: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.251, A:V.255, A:V.255 EDO.10: 4 residues within 4Å: Chain A: G.39, S.40, R.41, R.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41, A:R.42 EDO.11: 8 residues within 4Å: Chain A: L.192, D.193, N.194, A.209, P.210, T.211, V.269, D.270 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.211, A:T.211 EDO.12: 6 residues within 4Å: Chain A: R.79, T.80, G.81, T.82, L.85, F.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.79, A:R.79, A:T.82, A:T.82 EDO.13: 6 residues within 4Å: Chain A: W.260, I.315, R.317, W.320, V.323, L.330 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.317, A:R.317, A:W.320 Water bridges: A:W.260, A:E.313, A:V.323 EDO.14: 3 residues within 4Å: Chain A: Q.280, E.281, R.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.281, A:R.284, A:R.284 EDO.15: 2 residues within 4Å: Chain A: P.76, R.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.77 EDO.16: 6 residues within 4Å: Chain A: R.167, E.170, V.225, P.226, E.227, R.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.167, A:E.227, A:R.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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