SMTL ID : 7b8l.1

Notum-Fragment 174

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 3 residues within 4Å: Chain A: R.295, K.326, V.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.5: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284 SO4.6: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.197 Water bridges: A:Y.197 Salt bridges: A:R.198 SO4.7: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:E.133

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: R.13, K.35, E.36 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.13, A:E.36 EDO.9: 4 residues within 4Å: Chain A: S.40, R.41, R.42, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.41, A:R.42, A:N.97 EDO.10: 8 residues within 4Å: Chain A: L.192, D.193, N.194, A.209, P.210, T.211, V.269 Ligands: AY4.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.211, A:T.211

1 x AY4: 2,4-bis(fluoranyl)-6-(1~{H}-pyrazol-3-yl)phenol(Non-covalent)

AY4.11: 10 residues within 4Å: Chain A: W.51, V.110, S.155, T.159, F.191, P.210, I.214, F.242, F.243 Ligands: EDO.10 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.51, A:F.191, A:I.214 Hydrogen bonds: A:W.51, A:S.155, A:A.156 pi-Stacking: A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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