SMTL ID : 7bnf.1

Notum Cotinine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.167, E.170, V.225, P.226, E.227, R.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.227 Salt bridges: A:R.167, A:R.230 SO4.2: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:Y.123 Salt bridges: A:R.56 SO4.4: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.197 Water bridges: A:Y.197 Salt bridges: A:R.198 SO4.5: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284 SO4.6: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141 SO4.7: 4 residues within 4Å: Chain A: P.351, P.356, V.357, H.358 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.357, A:H.358 Water bridges: A:L.352, A:C.355

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: R.292, R.295, H.296, K.299 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.292, A:R.295 GOL.9: 5 residues within 4Å: Chain A: D.26, Y.63, K.117, E.122, Y.123 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.63, A:K.117, A:K.117, A:E.122, A:Y.123, A:Y.123 GOL.10: 7 residues within 4Å: Chain A: Y.33, R.68, W.75, P.76, R.79, F.102, P.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.79, A:R.79 GOL.11: 6 residues within 4Å: Chain A: L.14, L.16, S.72, R.73, W.75, R.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.73 Water bridges: A:S.72 GOL.12: 5 residues within 4Å: Chain A: A.128, L.129, Q.132, R.167, V.224 No protein-ligand interaction detected (PLIP) GOL.13: 3 residues within 4Å: Chain A: R.339, H.342, L.352 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.339 GOL.14: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.251, A:R.252, A:V.255, A:V.255 Water bridges: A:L.251

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 3 residues within 4Å: Chain A: N.19, V.22, L.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

1 x U5H: (5~{S})-1-methyl-5-pyridin-3-yl-pyrrolidin-2-one(Non-covalent)

U5H.16: 8 residues within 4Å: Chain A: W.51, Y.52, A.156, F.191, P.210, I.214, F.243, A.265 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.51, A:F.191, A:F.243, A:A.265 Hydrogen bonds: A:W.51, A:Y.52 Water bridges: A:A.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Inhibitor. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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