SMTL ID : 7b86.1

Notum-Fragment067

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:K.120, A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.5: 1 residues within 4Å: Chain A: R.228 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.228

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.19, V.22 No protein-ligand interaction detected (PLIP)

1 x AW7: 2-[4-(1~{H}-pyrazol-3-yl)phenoxy]pyrimidine(Non-covalent)

AW7.3: 11 residues within 4Å: Chain A: G.50, W.51, Y.52, S.155, A.156, T.159, F.191, I.214, F.242, F.243, A.265 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.51, A:Y.52, A:A.156, A:F.191, A:A.265 Hydrogen bonds: A:G.50, A:W.51, A:S.155 pi-Stacking: A:W.51, A:W.51, A:F.191, A:F.243

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: L.175, Y.177 Ligand excluded by PLIP EDO.7: 2 residues within 4Å: Chain A: Y.197, R.198 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: R.13, K.35, E.36, R.141 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: Y.248, L.251, S.253, P.254, V.255 Ligand excluded by PLIP EDO.10: 6 residues within 4Å: Chain A: G.39, S.40, R.41, R.42, N.97, K.147 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain A: L.192, D.193, N.194, P.210, T.211, V.269, D.270 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: D.166, R.167, P.226, E.227 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: W.260, I.315, R.317, W.320, V.323, L.330 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: E.313, R.317, P.373, T.374 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain A: E.264, L.310, S.311, H.312, E.313, P.373 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain A: Y.33, E.48, W.75, R.79, F.102, P.104 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain A: R.79, T.80, G.81, T.82, L.85, F.102, I.316 Ligand excluded by PLIP EDO.18: 2 residues within 4Å: Chain A: R.339, H.342 Ligand excluded by PLIP EDO.19: 5 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97 Ligand excluded by PLIP EDO.20: 2 residues within 4Å: Chain A: P.370, S.371 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: R.295, H.296, K.299 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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