SMTL ID : 7b8x.1

Notum-Fragment 210

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.6: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123, A:Y.123 Salt bridges: A:R.56

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.19, V.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: P.351, P.356, V.357, H.358 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.357, A:H.358 DMS.4: 2 residues within 4Å: Chain A: Y.197, R.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.198, A:R.198

1 x U3K: ~{N}-methyl-~{N}-[(5-methylfuran-2-yl)methyl]-1-phenyl-methanamine(Non-covalent)

U3K.5: 9 residues within 4Å: Chain A: G.50, W.51, Y.52, S.155, A.156, T.159, F.191, I.214, H.312 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.52, A:A.156, A:T.159, A:I.214 pi-Stacking: A:W.51, A:F.191 pi-Cation interactions: A:W.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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