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SMTL ID : 7b8m.1

Notum-Fragment 193

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68
SO4.3:	3 residues within 4Å: Chain A: R.295, K.326, V.360 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:R.295, A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326
SO4.4:	5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56
SO4.5:	4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2:

3 residues within 4Å:

Chain A: N.19, V.22, R.136

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:N.19, A:R.136, A:R.136

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6:

5 residues within 4Å:

Chain A: R.13, L.34, E.36, R.38, R.141

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:R.13, A:E.36, A:E.36, A:R.141

1 x GQM: 5-methoxy-2-(1~{H}-pyrazol-3-yl)phenol(Non-covalent)

GQM.7:

10 residues within 4Å:

Chain A: F.191, L.192, D.193, N.194, P.210, T.211, F.243, A.265, Q.266, V.269

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:T.211, A:V.269, A:V.269
Hydrogen bonds: A:N.194, A:N.194, A:P.210

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Palmitoleoyl-protein carboxylesterase NOTUM

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