SMTL ID : 7bcc.1

Notum Fragment 705

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 3 residues within 4Å: Chain A: R.295, K.326, V.360 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:R.295, A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.5: 5 residues within 4Å: Chain A: P.93, Y.94, W.95, W.96, N.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97, A:A.98 SO4.6: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.281, A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, L.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

1 x TB5: 4-(4-pyrrol-1-ylphenyl)morpholine(Non-covalent)

TB5.7: 9 residues within 4Å: Chain A: W.51, Y.52, F.191, P.210, I.214, F.242, F.243, A.265, V.269 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.214, A:F.242, A:F.243, A:V.269 pi-Stacking: A:Y.52, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

Related Entries With Identical Sequence