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SMTL ID : 5e0r.1

Crystal Structure of the first bromodomain of BRD4 in complex with AYC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

5 x 5J5: 2-[(chloroacetyl)amino]-5-[(E)-(4-sulfophenyl)diazenyl]benzenesulfonic acid(Non-covalent)

5J5.1:	9 residues within 4Å: Chain A: Q.21, N.80, A.81, Q.82, I.85, L.117, I.120, L.123, E.126 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.81, A:I.85, A:I.120, A:L.123 Hydrogen bonds: A:Q.21, A:A.81, A:Q.82
5J5.2:	11 residues within 4Å: Chain A: W.40, P.41, Q.44, P.45, V.46, D.47, K.50, L.51, D.104, I.105 Ligands: DMS.6 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:L.51, A:L.51, A:I.105, A:I.105 Hydrogen bonds: A:Q.44, A:P.45, A:D.47, A:D.104, A:I.105
5J5.3:	7 residues within 4Å: Chain A: Y.96, P.101, G.102, V.106, L.107, E.110 Ligands: 5J5.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.102, A:E.110
5J5.4:	4 residues within 4Å: Chain A: P.7, E.8, N.11, P.12 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.8 Hydrogen bonds: A:E.8, A:R.72
5J5.5:	4 residues within 4Å: Chain A: K.100, P.101, G.102 Ligands: 5J5.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.100, A:P.101 Hydrogen bonds: A:K.100

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6:

5 residues within 4Å:

Chain A: V.46, Y.56, N.99, I.105
Ligands: 5J5.2

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.99

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dong, J. et al., Crystal Structure of the first bromodomain of BRD4 in complex with AYC. To Be Published

Release Date

2016-10-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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2oss.1 | 2yel.1 | 3mxf.1 | 3p5o.1 | 3svf.1 | 3svg.1 | 3u5j.1 | 3u5k.1 | 3u5k.2 | 3u5k.3 | 3u5k.4 | 3u5l.1 | 3uvw.1 | 3uvx.1 | 3uvy.1 | 3uw9.1 | 3uw9.2 | 3zyu.1 | 3zyu.2 | 4a9l.1 | 4bw1.1 | 4bw2.1 | 4bw3.1 | 4bw4.1 | 4c67.1 | 4cfk.1 | 4cfl.1 | 4cl9.1 | 4clb.1 | 4e96.1 more...less...

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