SMTL ID : 9ht1.2 (1 other biounit)

A novel bottom-up approach to find lead-compounds in billion-sized libraries

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x 01: 1-(2,8-dioxa-5-azaspiro[3.6]decan-5-yl)-2-[[5-methyl-4-(4-methylphenyl)-1,2,4-triazol-3-yl]sulfanyl]ethanone

01.1: 11 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, C.95, Y.98, N.99, D.103, I.105 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:F.42, A:V.46, A:L.51, A:I.105 Hydrogen bonds: A:N.99

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.2: 6 residues within 4Å: Chain A: V.28, T.32, L.115, Q.118, K.119, E.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.32, A:K.119 Water bridges: A:E.122, A:E.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serrano-Morras, A. et al., A bottom-up approach to find lead compounds in expansive chemical spaces. Commun Chem (2025)

Release Date

2025-08-13

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 4

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