SMTL ID : 7c7v.1

Vitamin D3 receptor/lithochoric acid derivative complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FKC: (4R)-4-[(3R,5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-(2-methyl-2-oxidanyl-propyl)-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid(Non-covalent)

FKC.1: 26 residues within 4Å: Chain A: Y.38, L.71, L.74, A.75, L.77, V.78, I.112, I.115, M.116, S.119, S.122, W.130, C.132, Y.139, V.144, A.147, H.149, L.153, I.154, L.157, H.241, Y.245, L.248, L.258, V.262, F.266 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.71, A:V.78, A:W.130, A:W.130, A:Y.139, A:V.144, A:I.154, A:V.262 Hydrogen bonds: A:Y.38, A:S.122, A:S.122, A:H.149, A:H.241

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: T.124, M.125, D.126, K.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.125, A:K.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasaki, H. et al., Lithocholic Acid Derivatives as Potent Vitamin D Receptor Agonists. J.Med.Chem. (2021)

Release Date

2021-01-20

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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