SMTL ID : 5zwe.1

Covalent bond formation between histidine of Vitamin D receptor (VDR) and a full agonist having a vinyl ketone group via conjugate addition reaction

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.72 Å
Oligo State
hetero-1-1-mer
Ligands
1 x 9K0: (6R)-6-[(1R,3aS,4E,7aR)-7a-methyl-4-[2-[(3R,5R)-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]hept-1-en-3-one(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Yoshizawa, M. et al., Identification of the Histidine Residue in Vitamin D Receptor That Covalently Binds to Electrophilic Ligands. J. Med. Chem. (2018)
Release Date
2018-07-18
Peptides
Vitamin D3 receptor: A
13-meric peptide from DRIP205 NR2 BOX peptide: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C

Vitamin D3 receptor

13-meric peptide from DRIP205 NR2 BOX peptide

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1rjk.1 | 1rjk.2 | 1rk3.1 | 1rk3.2 | 1rkg.1 | 1rkg.2 | 1rkh.1 | 1rkh.2 | 2o4j.1 | 2o4j.2 | 2o4r.1 | 2o4r.2 | 2zfx.1 | 2zl9.1 | 2zla.1 | 2zlc.1 | 2zmh.1 | 2zmi.1 | 2zmj.1 | 2zxm.1 | 2zxm.2 | 2zxn.1 | 2zxn.2 | 3a2h.1 | 3afr.1 | 3aun.1 | 3vjs.1 | 3vjt.1 | 3vrt.1 | 3vru.1  more...