SMTL ID : 7vqp.1

Vitamin D receptor complexed with a lithocholic acid derivative

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7SW: 3-((R)-4-((3R,5R,8R,9S,10S,13R,14S,17R)-3-(2-hydroxy-2-methylpropyl)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)propanoic acid(Non-covalent)

7SW.1: 33 residues within 4Å: Chain A: T.37, Y.38, D.39, P.40, L.71, L.74, A.75, L.77, V.78, Y.80, S.81, K.84, I.112, I.115, M.116, R.118, S.119, S.122, W.130, C.132, Y.139, V.144, A.147, H.149, L.153, I.154, L.157, H.241, Y.245, L.248, L.258, V.262, F.266 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.71, A:L.77, A:V.78, A:I.115, A:W.130, A:Y.139, A:V.144, A:L.153, A:I.154, A:V.262 Hydrogen bonds: A:Y.38, A:D.39, A:D.39, A:H.149, A:H.241 Water bridges: A:R.118 Salt bridges: A:K.84, A:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshihara, A. et al., Lithocholic Acid Amides as Potent Vitamin D Receptor Agonists. Biomolecules (2022)

Release Date

2022-03-09

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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