SMTL ID : 6k5o.1

Development of Novel Lithocholic Acid Derivatives as Vitamin D Receptor Agonists

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x D0O: (4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3-methylsulfonyloxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid(Non-covalent)

D0O.1: 23 residues within 4Å: Chain A: Y.38, Y.42, L.71, L.74, L.77, V.78, I.112, I.115, S.119, S.122, W.130, C.132, Y.139, V.144, A.147, H.149, L.153, H.241, Y.245, L.248, L.258, V.262, F.266 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.74, A:L.74, A:L.77, A:I.112, A:I.115, A:W.130, A:Y.139, A:A.147, A:L.153 Hydrogen bonds: A:S.122 Salt bridges: A:H.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masuno, H. et al., Development of novel lithocholic acid derivatives as vitamin D receptor agonists. Bioorg.Med.Chem. (2019)

Release Date

2019-07-24

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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