SMTL ID : 3wtq.1

Crystal structure of VDR-LBD complexed with 22S-butyl-2-methylidene-19-nor-1a,25-dihydroxyvitamin D3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YS9: (1R,3R,7E,17beta)-17-[(2R,3S)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

YS9.1: 22 residues within 4Å: Chain A: Y.38, Y.42, F.45, L.71, L.74, L.77, V.78, S.81, I.115, M.116, R.118, S.119, S.122, W.130, C.132, V.144, H.149, L.153, L.157, H.241, Y.245, F.266 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.38, A:F.45, A:L.71, A:L.74, A:L.77, A:V.78, A:I.115, A:W.130, A:V.144, A:L.157, A:H.241, A:F.266 Hydrogen bonds: A:R.118, A:S.122, A:S.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakabayashi, M. et al., Crystal structure of VDR-LBD complexed with 22S-butyl-2-methylidene-19-nor-1a,25-dihydroxyvitamin D3. To be Published

Release Date

2015-04-15

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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