SMTL ID : 3vtb.1

Crystal structure of rat vitamin D receptor bound to a partial agonist 25-adamantyl-23-yne-19-norvitammin D ADTK1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TKA: (1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

TKA.1: 22 residues within 4Å: Chain A: Y.38, Y.42, F.45, L.71, L.74, A.75, V.78, S.81, R.118, S.119, S.122, W.130, C.132, Y.139, A.147, H.149, H.241, Y.245, L.248, L.258, V.262, F.266 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.38, A:F.45, A:L.71, A:L.74, A:V.78, A:W.130, A:W.130, A:Y.139, A:Y.245, A:L.248, A:L.258, A:V.262, A:F.266 Hydrogen bonds: A:R.118, A:S.122, A:H.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudo, T. et al., Combination of Triple Bond and Adamantane Ring on the Vitamin D Side Chain Produced Partial Agonists for Vitamin D Receptor. J.Med.Chem. (2014)

Release Date

2013-06-12

Peptides

Vitamin D3 receptor: A
COACTIVATOR PEPTIDE DRIP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vitamin D3 receptor

COACTIVATOR PEPTIDE DRIP

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