SMTL ID : 5xpn.1

Crystal structure of VDR-LBD complexed with 25RS-(hydroxyphenyl)-25-methoxy-2-methylidene-19,26,27-trinor-1-hydroxyvitamin D3

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.96 Å
Oligo State
hetero-1-1-mer
Ligands
1 x 8BO: (1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R},6~{S})-6-(4-hydroxyphenyl)-6-methoxy-hexan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol(Non-covalent)
1 x 9RO: (1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R},6~{R})-6-(4-hydroxyphenyl)-6-methoxy-hexan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Kato, A. et al., Vitamin D Analogues with a p-Hydroxyphenyl Group at the C25 Position: Crystal Structure of Vitamin D Receptor Ligand-Binding Domain Complexed with the Ligand Explains the Mechanism Underlying Full Antagonistic Action. J. Med. Chem. (2017)
Release Date
2018-07-11
Peptides
Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

Related Entries With Identical Sequence

1rjk.1 | 1rjk.2 | 1rk3.1 | 1rk3.2 | 1rkg.1 | 1rkg.2 | 1rkh.1 | 1rkh.2 | 2o4j.1 | 2o4j.2 | 2o4r.1 | 2o4r.2 | 2zfx.1 | 2zl9.1 | 2zla.1 | 2zlc.1 | 2zmh.1 | 2zmi.1 | 2zmj.1 | 2zxm.1 | 2zxm.2 | 2zxn.1 | 2zxn.2 | 3a2h.1 | 3afr.1 | 3aun.1 | 3vjs.1 | 3vjt.1 | 3vrt.1 | 3vru.1  more...