SMTL ID : 3w5p.1

Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 4OA: (3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid(Non-covalent)

4OA.1: 17 residues within 4Å: Chain A: Y.38, Y.42, V.78, I.112, I.115, M.116, S.119, S.122, W.130, C.132, Y.139, V.144, A.147, H.149, L.153, I.154, H.241 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.112, A:I.115, A:W.130, A:W.130, A:Y.139, A:A.147, A:L.153, A:I.154 Hydrogen bonds: A:S.122, A:S.122 Water bridges: A:R.118, A:H.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masuno, H. et al., Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives. J.Lipid Res. (2013)

Release Date

2013-06-26

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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