SMTL ID : 3w5q.1

Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 3KL: (5beta,9beta)-3-oxocholan-24-oic acid(Non-covalent)

3KL.1: 17 residues within 4Å: Chain A: Y.38, Y.42, L.74, V.78, I.112, I.115, S.119, S.122, W.130, C.132, Y.139, V.144, A.147, H.149, L.153, I.154, H.241 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.74, A:L.74, A:I.112, A:I.115, A:W.130, A:W.130, A:Y.139, A:V.144, A:V.144, A:A.147, A:L.153, A:I.154 Hydrogen bonds: A:S.122, A:S.122 Water bridges: A:S.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masuno, H. et al., Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives. J.Lipid Res. (2013)

Release Date

2013-06-26

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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