SMTL ID : 3wt5.1

A mixed population of antagonist and agonist binding conformers in a single crystal explains partial agonism against vitamin D receptor: Active vitamin D analogues with 22R-alkyl group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YA1: (1R,3R,7E,17beta)-17-[(2R,3R)-3-butyl-6-hydroxy-6-methylheptan-2-yl]-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

YA1.1: 19 residues within 4Å: Chain A: Y.38, Y.42, V.78, S.81, I.112, I.115, M.116, R.118, S.119, S.122, W.130, C.132, V.144, H.149, L.153, I.154, L.157, H.241, F.266 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.38, A:V.78, A:V.78, A:I.112, A:I.115, A:W.130, A:V.144, A:H.149, A:I.154, A:L.157, A:F.266 Hydrogen bonds: A:Y.38, A:R.118, A:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anami, Y. et al., A Mixed Population of Antagonist and Agonist Binding Conformers in a Single Crystal Explains Partial Agonism against Vitamin D Receptor: Active Vitamin D Analogues with 22R-Alkyl Group. J.Med.Chem. (2014)

Release Date

2014-06-11

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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