SMTL ID : 3vtc.1

Crystal structure of rat vitamin D receptor bound to a partial agonist 26-adamantyl-23-yne-19-norvitammin D ADTK3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TK3: (1R,3R,7E,17beta)-17-{(2R,6R)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol(Non-covalent)

TK3.1: 23 residues within 4Å: Chain A: Y.38, Y.42, F.45, L.71, L.74, A.75, V.78, S.81, I.112, M.116, R.118, S.119, S.122, W.130, C.132, V.144, H.149, L.157, H.241, Y.245, L.248, L.258, F.266 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.38, A:F.45, A:L.71, A:V.78, A:I.112, A:W.130, A:V.144, A:V.144, A:L.157, A:H.241, A:Y.245, A:L.248, A:L.258, A:F.266 Hydrogen bonds: A:R.118, A:S.122

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: D.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.32 Water bridges: A:D.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kudo, T. et al., Combination of Triple Bond and Adamantane Ring on the Vitamin D Side Chain Produced Partial Agonists for Vitamin D Receptor. J.Med.Chem. (2014)

Release Date

2013-06-12

Peptides

Vitamin D3 receptor: A
COACTIVATOR PEPTIDE DRIP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vitamin D3 receptor

COACTIVATOR PEPTIDE DRIP

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