SMTL ID : 3afr.1

Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ICJ: (1R,3S,5Z)-5-[(2E)-2-{(1R,3aS,7aR)-1-[(1R,2S,4R)-2-butyl-4-hydroxy-1,5-dimethylhexyl]-7a-methyloctahydro-4H-inden-4-yli dene}ethylidene]-4-methylidenecyclohexane-1,3-diol(Non-covalent)

ICJ.1: 22 residues within 4Å: Chain A: Y.38, Y.42, L.71, L.74, A.75, L.77, V.78, S.81, I.115, R.118, S.119, S.122, W.130, C.132, Y.139, V.144, A.147, H.149, L.153, I.154, H.241, L.248 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Y.38, A:L.71, A:L.74, A:L.77, A:W.130, A:Y.139, A:V.144, A:V.144, A:A.147, A:L.153, A:I.154, A:L.248 Hydrogen bonds: A:Y.38, A:Y.38, A:S.81, A:R.118, A:S.122, A:H.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inaba, Y. et al., 22S-Butyl-1alpha,24R-dihydroxyvitamin D(3): Recovery of vitamin D receptor agonistic activity. J.Steroid Biochem.Mol.Biol. (2010)

Release Date

2010-03-31

Peptides

Vitamin D3 receptor: A
13-meric peptide from Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

13-meric peptide from Mediator of RNA polymerase II transcription subunit 1

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