SMTL ID : 3w5t.1

Crystal structure of complexes of vitamin D receptor ligand binding domain with lithocholic acid derivatives

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LHP: (3beta,5beta,9beta)-3-(propanoyloxy)cholan-24-oic acid(Non-covalent)

LHP.1: 23 residues within 4Å: Chain A: Y.38, Y.42, L.74, A.75, L.77, V.78, I.112, I.115, R.118, S.119, S.122, W.130, C.132, Y.139, V.144, H.149, L.153, I.154, H.241, Y.245, L.258, V.262, F.266 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.74, A:A.75, A:L.77, A:I.112, A:I.115, A:W.130, A:Y.139, A:V.144, A:L.153, A:I.154, A:L.258, A:V.262 Hydrogen bonds: A:Y.38, A:S.122 Water bridges: A:S.81 Salt bridges: A:H.149, A:H.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masuno, H. et al., Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives. J.Lipid Res. (2013)

Release Date

2013-06-26

Peptides

Vitamin D3 receptor: A
Mediator of RNA polymerase II transcription subunit 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

Mediator of RNA polymerase II transcription subunit 1

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