SMTL ID : 3vt6.1 (1 other biounit)

Crystal structure of rat VDR-LBD with 2-Substituted-16-ene-22-thia-1alpha,25-dihydroxy-26,27-dimethyl-19-norvitamin D3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 5YI: (1R,2Z,3R,5E,7E)-17-{(1S)-1-[(2-ethyl-2-hydroxybutyl)sulfanyl]ethyl}-2-(2-hydroxyethylidene)-9,10-secoestra-5,7,16-triene-1,3-diol(Non-covalent)

5YI.1: 18 residues within 4Å: Chain A: Y.38, Y.42, F.45, L.71, L.77, V.78, Y.80, S.81, I.115, R.118, S.119, S.122, W.130, C.132, V.144, H.149, H.241, F.266 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.38, A:L.71, A:L.77, A:I.115, A:W.130, A:V.144, A:F.266 Hydrogen bonds: A:R.118, A:S.122, A:H.149 Water bridges: A:D.39, A:Y.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakabayashi, M. et al., Crystal structures of hereditary vitamin D-resistant rickets-associated vitamin D receptor mutants R270L and W282R bound to 1,25-dihydroxyvitamin D3 and synthetic ligands. J.Med.Chem. (2013)

Release Date

2013-05-22

Peptides

Vitamin D3 receptor: A
COACTIVATOR PEPTIDE DRIP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Vitamin D3 receptor

COACTIVATOR PEPTIDE DRIP

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