SMTL ID : 5swq.1

Crystal Structure of HLA-A*0201 in complex with NA231, an influenza epitope

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CYS- VAL- ASN- GLY- SER- CYS- PHE- THR- VAL: NA231 influenza epitope(Non-covalent)

CYS-VAL-ASN-GLY-SER-CYS-PHE-THR-VAL.1: 25 residues within 4Å: Chain A: M.5, Y.7, E.63, K.66, H.70, T.73, D.77, T.80, L.81, Y.84, R.97, Y.99, H.114, Y.116, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, T.163, W.167, Y.171 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.7, A:K.66, A:L.81, A:Y.84, A:Y.116, A:Y.123, A:T.143, A:W.147, A:V.152, A:L.156, A:Y.159 Hydrogen bonds: A:E.63, A:D.77, A:Y.84, A:Y.99, A:Y.99, A:T.143, A:K.146, A:Q.155, A:Y.159, A:Y.171 Water bridges: A:E.63, A:D.77, A:D.77, A:K.146, A:Q.155 Salt bridges: A:K.146 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grant, E.J. et al., Lack of Heterologous Cross-reactivity toward HLA-A*02:01 Restricted Viral Epitopes Is Underpinned by Distinct alpha beta T Cell Receptor Signatures. J.Biol.Chem. (2016)

Release Date

2016-10-05

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

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