SMTL ID : 7r6k.1

State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x TYR- LEU- THR- LYS- ASN- GLU- ARG- ARG: RRP17 isoform 1(Non-functional Binders)

TYR-LEU-THR-LYS-ASN-GLU-ARG-ARG.1: 1 residues within 4Å: Chain A: G.54 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cruz, V.E. et al., Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-11-09

Peptides

60S ribosomal subunit assembly/export protein LOC1: B
Nucleolar complex protein 2: C
Ribosome biogenesis protein BRX1: D
60S ribosomal protein L8-A: E
Nucleolar complex-associated protein 3: F
rRNA-processing protein EBP2: G
60S ribosomal protein L15-A: H
60S ribosomal protein L34-A: I
60S ribosomal protein L36-A: J
60S ribosome subunit biogenesis protein NIP7: K
Ribosome biogenesis protein ERB1: L
25S rRNA (cytosine(2870)-C(5))-methyltransferase: M
Ribosome biogenesis protein NSA2: N
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase: O

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
7

C
8

D
A

E
G

F
I

G
J

H
N

I
g

J
i

K
l

L
m

M
q

N
r

O
w

60S ribosomal subunit assembly/export protein LOC1

Nucleolar complex protein 2

Ribosome biogenesis protein BRX1

60S ribosomal protein L8-A

Nucleolar complex-associated protein 3

rRNA-processing protein EBP2

60S ribosomal protein L15-A

60S ribosomal protein L34-A

60S ribosomal protein L36-A

60S ribosome subunit biogenesis protein NIP7

Ribosome biogenesis protein ERB1

25S rRNA (cytosine(2870)-C(5))-methyltransferase

Ribosome biogenesis protein NSA2

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase

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