SMTL ID : 6n8j.1

Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Zhou, Y. et al., Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun (2019)
Release Date
2019-03-13
Peptides
60S ribosomal protein L5: A
60S ribosomal protein L11-A: B
60S ribosomal protein L2-A: C
60S ribosomal protein L28: D
60S ribosomal protein L3: E
Nucleolar GTP-binding protein 1: F
60S ribosomal protein L4-A: G
60S ribosomal protein L30: H
60S ribosomal protein L31-A: I
60S ribosomal protein L6-A: J
60S ribosomal protein L32: K
60S ribosomal protein L7-A: L
60S ribosomal protein L33-A: M
60S ribosomal protein L8-A: N
60S ribosomal protein L34-A: O
Bud site selection protein 20: P
60S ribosomal protein L9-A: Q
60S ribosomal protein L35-A: R
60S ribosomal protein L36-A: S
60S ribosomal protein L37-A: T
60S ribosomal protein L38: U
Nucleolar GTP-binding protein 2: V
60S ribosomal protein L13-A: W
60S ribosomal protein L39: X
60S ribosomal protein L14-A: Y
60S ribosomal protein L43-A: Z
60S ribosomal protein L15-A: 0
Ribosome biogenesis protein RLP24: 1
60S ribosomal protein L16-A: 2
60S ribosomal protein L17-A: 3
60S ribosomal protein L18-A: 4
60S ribosomal protein L19-A: 5
Ribosome biogenesis protein NSA2: 6
60S ribosomal protein L20-A: 7
60S ribosomal protein L21-A: 8
60S ribosomal protein L22-A: 9
60S ribosomal protein L23-A: a
Ribosome assembly factor MRT4: b
60S ribosomal protein L25: c
60S ribosomal protein L26-A: d
Eukaryotic translation initiation factor 6: e
60S ribosomal protein L27-A: f
UPF0642 protein YBL028C: g
60S ribosomal protein L12: h
60S ribosomal protein L42-A: i
60S ribosomal protein L29: j
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
D
B
J
C
A
D
a
E
B
F
b
G
C
H
c
I
d
J
E
K
e
L
F
M
f
N
G
O
g
P
I
Q
H
R
h
S
i
T
j
U
k
V
m
W
L
X
l
Y
M
Z
p
0
N
1
u
2
O
3
P
4
Q
5
R
6
r
7
S
8
T
9
U
a
V
b
W
c
X
d
Y
e
y
f
Z
g
z
h
K
i
q
j
o

60S ribosomal protein L5

60S ribosomal protein L11-A

60S ribosomal protein L2-A

60S ribosomal protein L28

60S ribosomal protein L3

Nucleolar GTP-binding protein 1

60S ribosomal protein L4-A

60S ribosomal protein L30

60S ribosomal protein L31-A

60S ribosomal protein L6-A

60S ribosomal protein L32

60S ribosomal protein L7-A

60S ribosomal protein L33-A

60S ribosomal protein L8-A

60S ribosomal protein L34-A

Bud site selection protein 20

60S ribosomal protein L9-A

60S ribosomal protein L35-A

60S ribosomal protein L36-A

60S ribosomal protein L37-A

60S ribosomal protein L38

Nucleolar GTP-binding protein 2

60S ribosomal protein L13-A

60S ribosomal protein L39

60S ribosomal protein L14-A

60S ribosomal protein L43-A

60S ribosomal protein L15-A

Ribosome biogenesis protein RLP24

60S ribosomal protein L16-A

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

Ribosome biogenesis protein NSA2

60S ribosomal protein L20-A

60S ribosomal protein L21-A

60S ribosomal protein L22-A

60S ribosomal protein L23-A

Ribosome assembly factor MRT4

60S ribosomal protein L25

60S ribosomal protein L26-A

Eukaryotic translation initiation factor 6

60S ribosomal protein L27-A

UPF0642 protein YBL028C

60S ribosomal protein L12

60S ribosomal protein L42-A

60S ribosomal protein L29

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1t0k.1 | 2ww9.1 | 2wwa.1 | 2wwb.1 | 3j16.1 | 3j2i.2 | 3j6x.2 | 3j6x.3 | 3j6x.4 | 3j6x.5 | 3j6x.6 | 3j6x.7 | 3j6x.8 | 3j6x.9 | 3j6x.11 | 3j6x.12 | 3j6x.13 | 3j6x.14 | 3j6x.15 | 3j6x.16 | 3j6x.17 | 3j6x.18 | 3j6x.19 | 3j6x.20 | 3j6x.21 | 3j6x.22 | 3j6x.24 | 3j6x.25 | 3j6x.26 | 3j6x.27  more...