SMTL ID : 6elz.1

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Kater, L. et al., Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell (2017)
Release Date
2017-12-27
Peptides
60S ribosomal protein L13-A: D
60S ribosomal protein L15-A: E
60S ribosomal protein L18-A: F
60S ribosomal protein L19-A: G
60S ribosomal protein L20-A: H
60S ribosomal protein L21-A: I
60S ribosomal protein L22-A: J
60S ribosomal protein L27-A: K
60S ribosomal protein L30: L
60S ribosomal protein L31-A: M
60S ribosomal protein L32: N
60S ribosomal protein L33-A: O
60S ribosomal protein L34-A: P
60S ribosomal protein L36-A: Q
60S ribosomal protein L37-A: R
60S ribosomal protein L38: S
60S ribosomal protein L16-A: T
60S ribosomal protein L23-A: U
60S ribosomal protein L28: V
60S ribosomal protein L17-A: W
60S ribosomal protein L25: X
60S ribosomal protein L26-A: Y
60S ribosomal protein L35-A: Z
60S ribosomal protein L7-A: 0
60S ribosomal protein L3: 1
60S ribosomal protein L4-A: 2
60S ribosomal protein L9-A: 3
Ribosome biogenesis protein BRX1: 4
Proteasome-interacting protein CIC1: 5
Ribosome biogenesis protein ERB1: 6
ATP-dependent RNA helicase HAS1: 7
Ribosome assembly factor MRT4: 8
60S ribosome subunit biogenesis protein NIP7: 9
Nucleolar GTP-binding protein 1: a
Ribosome biogenesis protein 15: b
Pescadillo homolog: c
Ribosome biogenesis protein NSA2: d
Nuclear GTP-binding protein NUG1: e
Ribosome biogenesis protein RLP7: f
Eukaryotic translation initiation factor 6: g
UPF0642 protein YBL028C: h
Ribosome biogenesis protein YTM1: i
25S rRNA (cytosine(2870)-C(5))-methyltransferase: j
Ribosome biogenesis protein RLP24: k
Nucleolar protein 16: l
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase: m
Nucleolar complex-associated protein 3: n
rRNA-processing protein EBP2: o
60S ribosomal protein L6-A: p
60S ribosomal protein L8-A: q
60S ribosomal protein L14-A: r
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
D
L
E
N
F
Q
G
R
H
S
I
T
J
U
K
Z
L
c
M
d
N
e
O
f
P
g
Q
i
R
j
S
k
T
O
U
V
V
a
W
P
X
X
Y
Y
Z
h
0
F
1
B
2
C
3
H
4
A
5
K
6
m
7
D
8
W
9
l
a
b
b
o
c
n
d
r
e
s
f
t
g
y
h
z
i
p
j
q
k
u
l
v
m
w
n
I
o
J
p
E
q
G
r
M

60S ribosomal protein L13-A

60S ribosomal protein L15-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L21-A

60S ribosomal protein L22-A

60S ribosomal protein L27-A

60S ribosomal protein L30

60S ribosomal protein L31-A

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L34-A

60S ribosomal protein L36-A

60S ribosomal protein L37-A

60S ribosomal protein L38

60S ribosomal protein L16-A

60S ribosomal protein L23-A

60S ribosomal protein L28

60S ribosomal protein L17-A

60S ribosomal protein L25

60S ribosomal protein L26-A

60S ribosomal protein L35-A

60S ribosomal protein L7-A

60S ribosomal protein L3

60S ribosomal protein L4-A

60S ribosomal protein L9-A

Ribosome biogenesis protein BRX1

Proteasome-interacting protein CIC1

Ribosome biogenesis protein ERB1

ATP-dependent RNA helicase HAS1

Ribosome assembly factor MRT4

60S ribosome subunit biogenesis protein NIP7

Nucleolar GTP-binding protein 1

Ribosome biogenesis protein 15

Pescadillo homolog

Ribosome biogenesis protein NSA2

Nuclear GTP-binding protein NUG1

Ribosome biogenesis protein RLP7

Eukaryotic translation initiation factor 6

UPF0642 protein YBL028C

Ribosome biogenesis protein YTM1

25S rRNA (cytosine(2870)-C(5))-methyltransferase

Ribosome biogenesis protein RLP24

Nucleolar protein 16

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase

Nucleolar complex-associated protein 3

rRNA-processing protein EBP2

60S ribosomal protein L6-A

60S ribosomal protein L8-A

60S ribosomal protein L14-A

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1t0k.1 | 2ww9.1 | 2wwa.1 | 2wwb.1 | 3j16.1 | 3j2i.2 | 3j6x.3 | 3j6x.4 | 3j6x.6 | 3j6x.7 | 3j6x.8 | 3j6x.9 | 3j6x.12 | 3j6x.13 | 3j6x.14 | 3j6x.15 | 3j6x.16 | 3j6x.17 | 3j6x.18 | 3j6x.19 | 3j6x.20 | 3j6x.21 | 3j6x.22 | 3j6x.24 | 3j6x.25 | 3j6x.26 | 3j6x.27 | 3j6x.29 | 3j6x.30 | 3j6x.31  more...