SMTL ID : 6em5.1

State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
None
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Kater, L. et al., Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell (2017)
Release Date
2017-12-27
Peptides
60S ribosomal protein L13-A: C
60S ribosomal protein L14-A: D
60S ribosomal protein L15-A: E
60S ribosomal protein L18-A: F
60S ribosomal protein L19-A: G
60S ribosomal protein L20-A: H
60S ribosomal protein L21-A: I
60S ribosomal protein L22-A: J
60S ribosomal protein L27-A: K
60S ribosomal protein L30: L
60S ribosomal protein L31-A: M
60S ribosomal protein L32: N
60S ribosomal protein L33-A: O
60S ribosomal protein L34-A: P
60S ribosomal protein L36-B: Q
60S ribosomal protein L37-A: R
60S ribosomal protein L38: S
60S ribosomal protein L6-A: T
60S ribosomal protein L8-A: U
60S ribosomal protein L16-A: V
60S ribosomal protein L23-A: W
60S ribosomal protein L25: X
60S ribosomal protein L26-A: Y
60S ribosomal protein L35-A: Z
60S ribosomal protein L3: 0
60S ribosomal protein L4-A: 1
60S ribosomal protein L9-A: 2
Ribosome biogenesis protein BRX1: 3
Proteasome-interacting protein CIC1: 4
Ribosome biogenesis protein ERB1: 5
ATP-dependent RNA helicase HAS1: 6
Ribosome assembly factor MRT4: 7
60S ribosome subunit biogenesis protein NIP7: 8
Nucleolar GTP-binding protein 1: 9
Ribosome biogenesis protein 15: a
Pescadillo homolog: b
Ribosome biogenesis protein NSA2: c
Nuclear GTP-binding protein NUG1: d
Ribosome biogenesis protein RLP7: e
Eukaryotic translation initiation factor 6: f
UPF0642 protein YBL028C: g
Ribosome biogenesis protein YTM1: h
25S rRNA (cytosine(2870)-C(5))-methyltransferase: i
Ribosome biogenesis protein RLP24: j
Nucleolar protein 16: k
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase: l
Nucleolar complex-associated protein 3: m
rRNA-processing protein EBP2: n
Ribosome production factor 1: o
Protein MAK16: p
Ribosomal RNA-processing protein 1: q
Ribosome biogenesis protein NSA1: r
60S ribosomal protein L7-A: t
60S ribosomal protein L17-A: u
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
L
D
M
E
N
F
Q
G
R
H
S
I
T
J
U
K
Z
L
c
M
d
N
e
O
f
P
g
Q
i
R
j
S
k
T
E
U
G
V
O
W
V
X
X
Y
Y
Z
h
0
B
1
C
2
H
3
A
4
K
5
m
6
D
7
W
8
l
9
b
a
o
b
n
c
r
d
s
e
t
f
y
g
z
h
p
i
q
j
u
k
v
l
w
m
I
n
J
o
x
p
3
q
4
r
5
t
F
u
P

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L21-A

60S ribosomal protein L22-A

60S ribosomal protein L27-A

60S ribosomal protein L30

60S ribosomal protein L31-A

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L34-A

60S ribosomal protein L36-B

60S ribosomal protein L37-A

60S ribosomal protein L38

60S ribosomal protein L6-A

60S ribosomal protein L8-A

60S ribosomal protein L16-A

60S ribosomal protein L23-A

60S ribosomal protein L25

60S ribosomal protein L26-A

60S ribosomal protein L35-A

60S ribosomal protein L3

60S ribosomal protein L4-A

60S ribosomal protein L9-A

Ribosome biogenesis protein BRX1

Proteasome-interacting protein CIC1

Ribosome biogenesis protein ERB1

ATP-dependent RNA helicase HAS1

Ribosome assembly factor MRT4

60S ribosome subunit biogenesis protein NIP7

Nucleolar GTP-binding protein 1

Ribosome biogenesis protein 15

Pescadillo homolog

Ribosome biogenesis protein NSA2

Nuclear GTP-binding protein NUG1

Ribosome biogenesis protein RLP7

Eukaryotic translation initiation factor 6

UPF0642 protein YBL028C

Ribosome biogenesis protein YTM1

25S rRNA (cytosine(2870)-C(5))-methyltransferase

Ribosome biogenesis protein RLP24

Nucleolar protein 16

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase

Nucleolar complex-associated protein 3

rRNA-processing protein EBP2

Ribosome production factor 1

Protein MAK16

Ribosomal RNA-processing protein 1

Ribosome biogenesis protein NSA1

60S ribosomal protein L7-A

60S ribosomal protein L17-A

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