SMTL ID : 6em5.1

State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

None

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH

Citation

Kater, L. et al., Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell (2017)

Release Date

2017-12-27

Peptides

60S ribosomal protein L13-A: C
60S ribosomal protein L14-A: D
60S ribosomal protein L15-A: E
60S ribosomal protein L18-A: F
60S ribosomal protein L19-A: G
60S ribosomal protein L20-A: H
60S ribosomal protein L21-A: I
60S ribosomal protein L22-A: J
60S ribosomal protein L27-A: K
60S ribosomal protein L30: L
60S ribosomal protein L31-A: M
60S ribosomal protein L32: N
60S ribosomal protein L33-A: O
60S ribosomal protein L34-A: P
60S ribosomal protein L36-B: Q
60S ribosomal protein L37-A: R
60S ribosomal protein L38: S
60S ribosomal protein L6-A: T
60S ribosomal protein L8-A: U
60S ribosomal protein L16-A: V
60S ribosomal protein L23-A: W
60S ribosomal protein L25: X
60S ribosomal protein L26-A: Y
60S ribosomal protein L35-A: Z
60S ribosomal protein L3: 0
60S ribosomal protein L4-A: 1
60S ribosomal protein L9-A: 2
Ribosome biogenesis protein BRX1: 3
Proteasome-interacting protein CIC1: 4
Ribosome biogenesis protein ERB1: 5
ATP-dependent RNA helicase HAS1: 6
Ribosome assembly factor MRT4: 7
60S ribosome subunit biogenesis protein NIP7: 8
Nucleolar GTP-binding protein 1: 9
Ribosome biogenesis protein 15: a
Pescadillo homolog: b
Ribosome biogenesis protein NSA2: c
Nuclear GTP-binding protein NUG1: d
Ribosome biogenesis protein RLP7: e
Eukaryotic translation initiation factor 6: f
UPF0642 protein YBL028C: g
Ribosome biogenesis protein YTM1: h
25S rRNA (cytosine(2870)-C(5))-methyltransferase: i
Ribosome biogenesis protein RLP24: j
Nucleolar protein 16: k
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase: l
Nucleolar complex-associated protein 3: m
rRNA-processing protein EBP2: n
Ribosome production factor 1: o
Protein MAK16: p
Ribosomal RNA-processing protein 1: q
Ribosome biogenesis protein NSA1: r
60S ribosomal protein L7-A: t
60S ribosomal protein L17-A: u

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
L

D
M

E
N

F
Q

G
R

H
S

I
T

J
U

K
Z

L
c

M
d

N
e

O
f

P
g

Q
i

R
j

S
k

T
E

U
G

V
O

W
V

X
X

Y
Y

Z
h

0
B

1
C

2
H

3
A

4
K

5
m

6
D

7
W

8
l

9
b

a
o

b
n

c
r

d
s

e
t

f
y

g
z

h
p

i
q

j
u

k
v

l
w

m
I

n
J

o
x

p
3

q
4

r
5

t
F

u
P

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L21-A

60S ribosomal protein L22-A

60S ribosomal protein L27-A

60S ribosomal protein L30

60S ribosomal protein L31-A

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L34-A

60S ribosomal protein L36-B

60S ribosomal protein L37-A

60S ribosomal protein L38

60S ribosomal protein L6-A

60S ribosomal protein L8-A

60S ribosomal protein L16-A

60S ribosomal protein L23-A

60S ribosomal protein L25

60S ribosomal protein L26-A

60S ribosomal protein L35-A

60S ribosomal protein L3

60S ribosomal protein L4-A

60S ribosomal protein L9-A

Ribosome biogenesis protein BRX1

Proteasome-interacting protein CIC1

Ribosome biogenesis protein ERB1

ATP-dependent RNA helicase HAS1

Ribosome assembly factor MRT4

60S ribosome subunit biogenesis protein NIP7

Nucleolar GTP-binding protein 1

Ribosome biogenesis protein 15

Pescadillo homolog

Ribosome biogenesis protein NSA2

Nuclear GTP-binding protein NUG1

Ribosome biogenesis protein RLP7

Eukaryotic translation initiation factor 6

UPF0642 protein YBL028C

Ribosome biogenesis protein YTM1

25S rRNA (cytosine(2870)-C(5))-methyltransferase

Ribosome biogenesis protein RLP24

Nucleolar protein 16

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase

Nucleolar complex-associated protein 3

rRNA-processing protein EBP2

Ribosome production factor 1

Protein MAK16

Ribosomal RNA-processing protein 1

Ribosome biogenesis protein NSA1

60S ribosomal protein L7-A

60S ribosomal protein L17-A

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