SMTL ID : 7ohx.1

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain 2: C.19, R.21, C.22, C.34, C.37, Y.39 4 PLIP interactions: 4 interactions with chain 2 Metal complexes: 2:C.19, 2:C.22, 2:C.34, 2:C.37 ZN.2: 6 residues within 4Å: Chain 7: C.6, C.9, S.11, F.31, C.32, C.36 4 PLIP interactions: 4 interactions with chain 7 Metal complexes: 7:C.6, 7:C.9, 7:S.11, 7:C.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poll, G. et al., Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One (2021)

Release Date

2021-11-03

Peptides

Protein MAK16: C
Ribosomal RNA-processing protein 1: D
Ribosome biogenesis protein NSA1: E
60S ribosomal protein L3: G
60S ribosomal protein L4-A: H
ATP-dependent RNA helicase HAS1: I
60S ribosomal protein L6-A: J
60S ribosomal protein L7-A: K
60S ribosomal protein L8-A: L
60S ribosomal protein L9-A: M
Proteasome-interacting protein CIC1: N
60S ribosomal protein L13-A: O
60S ribosomal protein L14-A: P
60S ribosomal protein L15-A: Q
60S ribosomal protein L16-A: R
60S ribosomal protein L17-A: S
60S ribosomal protein L18-A: T
60S ribosomal protein L20-A: U
Ribosome assembly factor MRT4: V
60S ribosomal protein L26-A: W
Nucleolar GTP-binding protein 1: X
60S ribosomal protein L32: Y
60S ribosomal protein L33-A: Z
60S ribosomal protein L35-A: 0
60S ribosomal protein L36-A: 1
60S ribosomal protein L37-A: 2
Ribosome biogenesis protein ERB1: 3
Pescadillo homolog: 4
Ribosome biogenesis protein 15: 5
Ribosome biogenesis protein RLP7: 6
Ribosome biogenesis protein RLP24: 7
Nucleolar protein 16: 8
Ribosome production factor 1: 9
Eukaryotic translation initiation factor 6: a

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
3

D
4

E
5

G
B

H
C

I
D

J
E

K
F

L
G

M
H

N
K

O
L

P
M

Q
N

R
O

S
P

T
Q

U
S

V
W

W
Y

X
b

Y
e

Z
f

0
h

1
i

2
j

3
m

4
n

5
o

6
t

7
u

8
v

9
x

a
y

Protein MAK16

Ribosomal RNA-processing protein 1

Ribosome biogenesis protein NSA1

60S ribosomal protein L3

60S ribosomal protein L4-A

ATP-dependent RNA helicase HAS1

60S ribosomal protein L6-A

60S ribosomal protein L7-A

60S ribosomal protein L8-A

60S ribosomal protein L9-A

Proteasome-interacting protein CIC1

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L16-A

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L20-A

Ribosome assembly factor MRT4

60S ribosomal protein L26-A

Nucleolar GTP-binding protein 1

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L35-A

60S ribosomal protein L36-A

60S ribosomal protein L37-A

Ribosome biogenesis protein ERB1

Pescadillo homolog

Ribosome biogenesis protein 15

Ribosome biogenesis protein RLP7

Ribosome biogenesis protein RLP24

Nucleolar protein 16

Ribosome production factor 1

Eukaryotic translation initiation factor 6

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