SMTL ID : 7ohv.1

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain 8: C.19, R.21, C.22, C.34, C.37, Y.39 4 PLIP interactions: 4 interactions with chain 8 Metal complexes: 8:C.19, 8:C.22, 8:C.34, 8:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poll, G. et al., Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One (2021)

Release Date

2021-11-03

Peptides

Ribosome biogenesis protein BRX1: D
60S ribosomal protein L3: E
60S ribosomal protein L4-A: F
ATP-dependent RNA helicase HAS1: G
60S ribosomal protein L6-A: H
60S ribosomal protein L7-A: I
60S ribosomal protein L8-A: J
60S ribosomal protein L9-A: K
rRNA-processing protein EBP2: L
Proteasome-interacting protein CIC1: M
60S ribosomal protein L13-A: N
60S ribosomal protein L14-A: O
60S ribosomal protein L15-A: P
60S ribosomal protein L16-A: Q
60S ribosomal protein L17-A: R
60S ribosomal protein L18-A: S
60S ribosomal protein L19-A: T
60S ribosomal protein L20-A: U
60S ribosomal protein L22-A: V
60S ribosomal protein L23-A: W
Ribosome assembly factor MRT4: X
60S ribosomal protein L25: Y
60S ribosomal protein L26-A: Z
60S ribosomal protein L27-A: 0
60S ribosomal protein L28: 1
Nucleolar GTP-binding protein 1: 2
60S ribosomal protein L31-A: 3
60S ribosomal protein L32: 4
60S ribosomal protein L33-A: 5
60S ribosomal protein L35-A: 6
60S ribosomal protein L36-A: 7
60S ribosomal protein L37-A: 8
60S ribosomal protein L38: 9
Ribosome biogenesis protein ERB1: a
Pescadillo homolog: b
Ribosome biogenesis protein 15: c
Ribosome biogenesis protein YTM1: d
Ribosome biogenesis protein NSA2: e
Ribosome biogenesis protein RLP7: f
Ribosome biogenesis protein RLP24: g
Nucleolar protein 16: h
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase: i
Eukaryotic translation initiation factor 6: j

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

E
B

F
C

G
D

H
E

I
F

J
G

K
H

L
J

M
K

N
L

O
M

P
N

Q
O

R
P

S
Q

T
R

U
S

V
U

W
V

X
W

Y
X

Z
Y

0
Z

1
a

2
b

3
d

4
e

5
f

6
h

7
i

8
j

9
k

a
m

b
n

c
o

d
p

e
r

f
t

g
u

h
v

i
w

j
y

Ribosome biogenesis protein BRX1

60S ribosomal protein L3

60S ribosomal protein L4-A

ATP-dependent RNA helicase HAS1

60S ribosomal protein L6-A

60S ribosomal protein L7-A

60S ribosomal protein L8-A

60S ribosomal protein L9-A

rRNA-processing protein EBP2

Proteasome-interacting protein CIC1

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L16-A

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L22-A

60S ribosomal protein L23-A

Ribosome assembly factor MRT4

60S ribosomal protein L25

60S ribosomal protein L26-A

60S ribosomal protein L27-A

60S ribosomal protein L28

Nucleolar GTP-binding protein 1

60S ribosomal protein L31-A

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L35-A

60S ribosomal protein L36-A

60S ribosomal protein L37-A

60S ribosomal protein L38

Ribosome biogenesis protein ERB1

Pescadillo homolog

Ribosome biogenesis protein 15

Ribosome biogenesis protein YTM1

Ribosome biogenesis protein NSA2

Ribosome biogenesis protein RLP7

Ribosome biogenesis protein RLP24

Nucleolar protein 16

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase

Eukaryotic translation initiation factor 6

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