SMTL ID : 6em1.1

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Kater, L. et al., Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell (2017)
Release Date
2017-12-27
Peptides
Ribosome production factor 1: A
60S ribosomal protein L7-A: B
Protein MAK16: C
Ribosomal RNA-processing protein 1: D
Ribosome biogenesis protein NSA1: E
Ribosome biogenesis protein BRX1: F
Nucleolar GTP-binding protein 1: G
rRNA-processing protein EBP2: H
Ribosome biogenesis protein NSA2: I
Nuclear GTP-binding protein NUG1: J
Ribosome biogenesis protein RLP24: K
Nucleolar protein 16: L
Ribosome assembly factor MRT4: M
Eukaryotic translation initiation factor 6: N
UPF0642 protein YBL028C: O
60S ribosomal protein L3: P
60S ribosomal protein L4-A: Q
60S ribosomal protein L32: R
60S ribosomal protein L6-A: S
60S ribosomal protein L33-A: T
60S ribosomal protein L8-A: U
60S ribosomal protein L35-A: V
60S ribosomal protein L9-A: W
60S ribosomal protein L36-B: X
60S ribosomal protein L37-A: Y
60S ribosomal protein L13-A: Z
60S ribosomal protein L14-A: 0
60S ribosomal protein L15-A: 1
60S ribosomal protein L16-A: 2
60S ribosomal protein L17-A: 3
60S ribosomal protein L18-A: 4
60S ribosomal protein L20-A: 5
60S ribosomal protein L23-A: 6
60S ribosomal protein L26-A: 7
Proteasome-interacting protein CIC1: b
Ribosome biogenesis protein ERB1: c
ATP-dependent RNA helicase HAS1: d
Ribosome biogenesis protein 15: e
Pescadillo homolog: f
Ribosome biogenesis protein RLP7: g
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
x
B
F
C
3
D
4
E
5
F
A
G
b
H
J
I
r
J
s
K
u
L
v
M
W
N
y
O
z
P
B
Q
C
R
e
S
E
T
f
U
G
V
h
W
H
X
i
Y
j
Z
L
0
M
1
N
2
O
3
P
4
Q
5
S
6
V
7
Y
b
K
c
m
d
D
e
o
f
n
g
t

Ribosome production factor 1

60S ribosomal protein L7-A

Protein MAK16

Ribosomal RNA-processing protein 1

Ribosome biogenesis protein NSA1

Ribosome biogenesis protein BRX1

Nucleolar GTP-binding protein 1

rRNA-processing protein EBP2

Ribosome biogenesis protein NSA2

Nuclear GTP-binding protein NUG1

Ribosome biogenesis protein RLP24

Nucleolar protein 16

Ribosome assembly factor MRT4

Eukaryotic translation initiation factor 6

UPF0642 protein YBL028C

60S ribosomal protein L3

60S ribosomal protein L4-A

60S ribosomal protein L32

60S ribosomal protein L6-A

60S ribosomal protein L33-A

60S ribosomal protein L8-A

60S ribosomal protein L35-A

60S ribosomal protein L9-A

60S ribosomal protein L36-B

60S ribosomal protein L37-A

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L16-A

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L20-A

60S ribosomal protein L23-A

60S ribosomal protein L26-A

Proteasome-interacting protein CIC1

Ribosome biogenesis protein ERB1

ATP-dependent RNA helicase HAS1

Ribosome biogenesis protein 15

Pescadillo homolog

Ribosome biogenesis protein RLP7

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2ww9.1 | 2wwa.1 | 2wwb.1 | 3j16.1 | 3j2i.2 | 3j6x.3 | 3j6x.4 | 3j6x.6 | 3j6x.7 | 3j6x.8 | 3j6x.9 | 3j6x.12 | 3j6x.13 | 3j6x.14 | 3j6x.15 | 3j6x.16 | 3j6x.17 | 3j6x.19 | 3j6x.22 | 3j6x.25 | 3j6x.31 | 3j6x.32 | 3j6x.34 | 3j6x.36 | 3j6y.3 | 3j6y.4 | 3j6y.6 | 3j6y.7 | 3j6y.8 | 3j6y.9  more...