- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x ALA- ALA- PRO- GLN- LYS: MAAAPQK nascent peptide(Non-functional Binders)
- 289 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 115 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
K.78: 5 residues within 4Å:- Chain A: G.1511, U.1512, U.1522, G.1523, C.1524
Ligand excluded by PLIPK.79: 5 residues within 4Å:- Chain A: A.1499, A.1500, A.1508, C.1521
- Ligands: MG.25
Ligand excluded by PLIPK.80: 3 residues within 4Å:- Chain A: U.789, A.790, G.791
Ligand excluded by PLIPK.81: 5 residues within 4Å:- Chain A: G.61, U.62, C.63, G.104, G.105
Ligand excluded by PLIPK.82: 1 residues within 4Å:- Chain A: G.376
Ligand excluded by PLIPK.83: 5 residues within 4Å:- Chain A: U.12, U.13, C.526, G.527, A.914
Ligand excluded by PLIPK.84: 5 residues within 4Å:- Chain A: A.563, C.564, U.565, G.566, G.567
Ligand excluded by PLIPK.85: 6 residues within 4Å:- Chain A: G.1053, G.1057, G.1058, C.1059, G.1198, U.1199
Ligand excluded by PLIPK.86: 4 residues within 4Å:- Chain A: G.115, A.116, G.117, G.289
Ligand excluded by PLIPK.87: 3 residues within 4Å:- Chain A: G.293, U.304, G.305
Ligand excluded by PLIPK.88: 3 residues within 4Å:- Chain A: A.759, G.760, G.761
Ligand excluded by PLIPK.89: 4 residues within 4Å:- Chain A: G.885, G.886, G.887, U.911
Ligand excluded by PLIPK.90: 4 residues within 4Å:- Chain A: U.1414, G.1415, U.1485, G.1486
Ligand excluded by PLIPK.91: 4 residues within 4Å:- Chain A: G.251, U.252, G.266, U.268
Ligand excluded by PLIPK.92: 3 residues within 4Å:- Chain A: G.257, G.258, G.266
Ligand excluded by PLIPK.93: 5 residues within 4Å:- Chain A: A.109, C.110, G.111, G.112, C.330
Ligand excluded by PLIPK.94: 5 residues within 4Å:- Chain A: U.1052, C.1200, U.1205, G.1206, G.1207
Ligand excluded by PLIPK.95: 3 residues within 4Å:- Chain A: A.865, C.866, G.1079
Ligand excluded by PLIPK.96: 3 residues within 4Å:- Chain A: G.976, C.1359, A.1362
Ligand excluded by PLIPK.97: 3 residues within 4Å:- Chain A: U.793, G.1517
- Chain V: C.1920
Ligand excluded by PLIPK.98: 5 residues within 4Å:- Chain A: G.11, U.12, G.21, G.22
- Ligands: MG.62
Ligand excluded by PLIPK.99: 5 residues within 4Å:- Chain A: C.1501, A.1502, G.1504, A.1507, A.1508
Ligand excluded by PLIPK.100: 4 residues within 4Å:- Chain A: U.1073, G.1074, A.1082, U.1083
Ligand excluded by PLIPK.101: 6 residues within 4Å:- Chain A: G.776, C.779, A.780, U.801, A.802, G.803
Ligand excluded by PLIPK.102: 3 residues within 4Å:- Chain A: U.943, G.944, G.1233
Ligand excluded by PLIPK.103: 2 residues within 4Å:- Chain A: A.780, G.800
Ligand excluded by PLIPK.104: 3 residues within 4Å:- Chain A: C.770, C.899
- Chain V: C.1832
Ligand excluded by PLIPK.105: 4 residues within 4Å:- Chain A: G.664, G.666, G.741
- Ligands: MG.56
Ligand excluded by PLIPK.106: 3 residues within 4Å:- Chain A: U.943, G.944, G.945
Ligand excluded by PLIPK.107: 4 residues within 4Å:- Chain A: A.949, G.971, G.1233, U.1364
Ligand excluded by PLIPK.108: 4 residues within 4Å:- Chain A: G.107, G.324, A.325, G.326
Ligand excluded by PLIPK.110: 5 residues within 4Å:- Chain A: U.1330, G.1331
- Chain M: T.19, I.21, V.24
Ligand excluded by PLIPK.321: 3 residues within 4Å:- Chain V: C.865, U.868, G.869
Ligand excluded by PLIPK.322: 1 residues within 4Å:- Chain V: G.1501
Ligand excluded by PLIPK.323: 1 residues within 4Å:- Chain V: A.2518
Ligand excluded by PLIPK.324: 5 residues within 4Å:- Chain V: A.693, U.694, G.695, U.767, G.768
Ligand excluded by PLIPK.325: 3 residues within 4Å:- Chain V: G.2458, U.2489, G.2490
Ligand excluded by PLIPK.326: 2 residues within 4Å:- Chain V: G.2747, C.2755
Ligand excluded by PLIPK.327: 3 residues within 4Å:- Chain V: A.2776, A.2781, G.2782
Ligand excluded by PLIPK.328: 3 residues within 4Å:- Chain V: U.25, G.26, G.27
Ligand excluded by PLIPK.329: 3 residues within 4Å:- Chain V: A.1652, C.2006, A.2823
Ligand excluded by PLIPK.330: 1 residues within 4Å:- Chain V: G.978
Ligand excluded by PLIPK.331: 1 residues within 4Å:- Chain V: A.2266
Ligand excluded by PLIPK.332: 3 residues within 4Å:- Chain V: G.971, G.974, G.989
Ligand excluded by PLIPK.333: 3 residues within 4Å:- Chain V: G.2643, G.2644, G.2645
Ligand excluded by PLIPK.334: 1 residues within 4Å:- Chain V: G.2250
Ligand excluded by PLIPK.335: 2 residues within 4Å:- Chain V: A.1952, A.1953
Ligand excluded by PLIPK.336: 3 residues within 4Å:- Chain V: A.195, A.196, A.197
Ligand excluded by PLIPK.337: 2 residues within 4Å:- Chain V: C.2646, U.2647
Ligand excluded by PLIPK.338: 3 residues within 4Å:- Chain V: G.24, U.25, A.514
Ligand excluded by PLIPK.339: 4 residues within 4Å:- Chain V: C.2681, U.2684, G.2685, U.2724
Ligand excluded by PLIPK.340: 3 residues within 4Å:- Chain V: A.1253, A.1254, G.1256
Ligand excluded by PLIPK.341: 3 residues within 4Å:- Chain V: G.2458, G.2490
- Ligands: MG.262
Ligand excluded by PLIPK.342: 1 residues within 4Å:- Chain V: G.2523
Ligand excluded by PLIPK.343: 5 residues within 4Å:- Chain V: G.2846, U.2847, G.2848, G.2869, C.2870
Ligand excluded by PLIPK.344: 5 residues within 4Å:- Chain V: G.2525, G.2526, C.2527, G.2536, U.2537
Ligand excluded by PLIPK.345: 5 residues within 4Å:- Chain V: G.2201, U.2202, U.2220, G.2221, C.2222
Ligand excluded by PLIPK.346: 2 residues within 4Å:- Chain V: G.1425, G.1426
Ligand excluded by PLIPK.347: 4 residues within 4Å:- Chain V: U.1769, G.1770, U.1982, G.1983
Ligand excluded by PLIPK.348: 3 residues within 4Å:- Chain V: C.1838, G.1839, G.1897
Ligand excluded by PLIPK.349: 7 residues within 4Å:- Chain V: A.575, U.576, U.2500, C.2501, A.2503, U.2504
- Ligands: MG.171
Ligand excluded by PLIPK.350: 5 residues within 4Å:- Chain V: U.1939, U.1940, A.1966, C.1967, G.2592
Ligand excluded by PLIPK.351: 3 residues within 4Å:- Chain V: A.2542, G.2543, G.2544
Ligand excluded by PLIPK.352: 5 residues within 4Å:- Chain V: A.2051, A.2052, G.2053, A.2577, A.2614
Ligand excluded by PLIPK.353: 4 residues within 4Å:- Chain V: G.2061, G.2447, C.2501, U.2504
Ligand excluded by PLIPK.354: 4 residues within 4Å:- Chain V: G.2250, G.2251, C.2496, A.2497
Ligand excluded by PLIPK.355: 4 residues within 4Å:- Chain V: U.827, A.2426, C.2427, G.2429
Ligand excluded by PLIPK.356: 4 residues within 4Å:- Chain V: A.1785, G.1980, A.1981, U.1982
Ligand excluded by PLIPK.357: 6 residues within 4Å:- Chain V: A.782, A.783, U.1778, A.1785, A.1787, C.1788
Ligand excluded by PLIPK.358: 2 residues within 4Å:- Chain V: G.2056, A.2577
Ligand excluded by PLIPK.359: 4 residues within 4Å:- Chain V: G.638, U.639, G.648, G.649
Ligand excluded by PLIPK.360: 5 residues within 4Å:- Chain V: A.1789, C.1790, G.1828
- Chain X: T.218, R.220
Ligand excluded by PLIPK.361: 4 residues within 4Å:- Chain V: U.2022, U.2034, C.2616, U.2617
Ligand excluded by PLIPK.362: 4 residues within 4Å:- Chain V: C.1838, G.1839, G.1840, A.1899
Ligand excluded by PLIPK.363: 5 residues within 4Å:- Chain V: A.2850, A.2851, G.2852, U.2865, U.2866
Ligand excluded by PLIPK.364: 5 residues within 4Å:- Chain V: U.593, U.594, G.662, G.663, G.664
Ligand excluded by PLIPK.365: 5 residues within 4Å:- Chain V: U.387, G.388, U.390, A.391, U.392
Ligand excluded by PLIPK.366: 4 residues within 4Å:- Chain V: G.1022, U.1023, G.1024, G.1025
Ligand excluded by PLIPK.367: 5 residues within 4Å:- Chain 5: G.32
- Chain V: A.941, G.942, G.1190, G.1191
Ligand excluded by PLIPK.368: 3 residues within 4Å:- Chain V: A.1784, A.1785, A.1981
Ligand excluded by PLIPK.369: 6 residues within 4Å:- Chain V: G.533, U.534, G.535, U.558, G.559, C.560
Ligand excluded by PLIPK.370: 4 residues within 4Å:- Chain V: G.2290, U.2291, A.2340, G.2341
Ligand excluded by PLIPK.371: 4 residues within 4Å:- Chain V: U.839, G.938, G.939, G.940
Ligand excluded by PLIPK.372: 5 residues within 4Å:- Chain V: U.1394, A.1395, U.1397, U.1602, A.1603
Ligand excluded by PLIPK.373: 5 residues within 4Å:- Chain V: A.13, G.15, C.16, G.524, U.525
Ligand excluded by PLIPK.374: 4 residues within 4Å:- Chain V: G.452, A.453, A.470, A.471
Ligand excluded by PLIPK.375: 4 residues within 4Å:- Chain V: A.2453, U.2506, A.2572, C.2573
Ligand excluded by PLIPK.376: 4 residues within 4Å:- Chain V: G.2697, U.2698, G.2708, G.2709
Ligand excluded by PLIPK.377: 3 residues within 4Å:- Chain V: G.2508, G.2509, U.2580
Ligand excluded by PLIPK.378: 5 residues within 4Å:- Chain V: G.1935, A.1936, U.1940, C.1961, C.1962
Ligand excluded by PLIPK.379: 4 residues within 4Å:- Chain V: C.1838, U.1841, G.1842, U.1898
Ligand excluded by PLIPK.380: 3 residues within 4Å:- Chain V: A.1772, A.1773, G.1828
Ligand excluded by PLIPK.381: 5 residues within 4Å:- Chain V: A.2513, U.2514, G.2569, G.2570, U.2571
Ligand excluded by PLIPK.382: 5 residues within 4Å:- Chain V: G.2686, U.2687, G.2688, G.2722, C.2723
Ligand excluded by PLIPK.383: 5 residues within 4Å:- Chain V: A.706, G.707, G.708, U.724, G.725
Ligand excluded by PLIPK.384: 4 residues within 4Å:- Chain V: A.197, G.2069, A.2070, U.2244
Ligand excluded by PLIPK.385: 2 residues within 4Å:- Chain V: G.2446, G.2447
Ligand excluded by PLIPK.386: 3 residues within 4Å:- Chain V: G.489, A.1321, A.1328
Ligand excluded by PLIPK.387: 6 residues within 4Å:- Chain V: C.565, U.566, U.576, G.577, G.809
- Ligands: MG.303
Ligand excluded by PLIPK.388: 5 residues within 4Å:- Chain V: G.1681, G.1682, G.1699, A.1762, G.1763
Ligand excluded by PLIPK.389: 3 residues within 4Å:- Chain V: A.1378, U.1379, G.1380
Ligand excluded by PLIPK.390: 4 residues within 4Å:- Chain V: G.58, U.59, U.67, G.68
Ligand excluded by PLIPK.391: 4 residues within 4Å:- Chain V: G.775, G.776, A.793, A.794
Ligand excluded by PLIPK.392: 4 residues within 4Å:- Chain V: A.505, C.510, U.511, G.1236
Ligand excluded by PLIPK.393: 4 residues within 4Å:- Chain V: A.374, G.375, C.393, G.408
Ligand excluded by PLIPK.394: 3 residues within 4Å:- Chain V: C.192, U.193, U.202
Ligand excluded by PLIPK.395: 3 residues within 4Å:- Chain V: U.588, A.670, C.671
Ligand excluded by PLIPK.396: 4 residues within 4Å:- Chain V: G.1215, G.1216, U.1234, G.1235
Ligand excluded by PLIPK.397: 1 residues within 4Å:- Chain V: G.177
Ligand excluded by PLIPK.398: 4 residues within 4Å:- Chain V: A.447, U.448, A.472, G.473
Ligand excluded by PLIPK.399: 1 residues within 4Å:- Chain V: A.1265
Ligand excluded by PLIPK.400: 3 residues within 4Å:- Chain V: G.2447, A.2448
- Ligands: MG.216
Ligand excluded by PLIPK.401: 3 residues within 4Å:- Chain V: A.727, G.728, A.730
Ligand excluded by PLIPK.403: 3 residues within 4Å:- Chain W: A.15, G.16, A.108
Ligand excluded by PLIPK.405: 3 residues within 4Å:- Chain V: A.2590
- Chain X: G.234, G.236
Ligand excluded by PLIP- 3 x ZN: ZINC ION(Non-covalent)
ZN.109: 4 residues within 4Å:- Chain B: H.15, D.185, D.201, D.202
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:H.15, B:D.185, B:D.201, B:D.201, B:D.202
ZN.408: 4 residues within 4Å:- Chain k: C.16, C.18, C.37, C.40
4 PLIP interactions:4 interactions with chain k- Metal complexes: k:C.16, k:C.18, k:C.37, k:C.40
ZN.409: 4 residues within 4Å:- Chain p: C.11, C.14, C.27, H.33
4 PLIP interactions:4 interactions with chain p- Metal complexes: p:C.11, p:C.14, p:C.27, p:H.33
- 1 x OCW: Tetracenomycin X(Non-functional Binders)
- 1 x CYS: CYSTEINE(Non-functional Binders)
- 1 x GLN: GLUTAMINE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leroy, E.C. et al., Tetracenomycin X sequesters peptidyl-tRNA during translation of QK motifs. Nat.Chem.Biol. (2023)
- Release Date
- 2023-04-12
- Peptides
- 30S ribosomal protein S2: B
30S ribosomal protein S3: C
30S ribosomal protein S4: D
30S ribosomal protein S5: E
30S ribosomal protein S6, fully modified isoform: F
30S ribosomal protein S7: G
30S ribosomal protein S8: H
30S ribosomal protein S9: I
30S ribosomal protein S10: J
30S ribosomal protein S11: K
30S ribosomal protein S12: L
30S ribosomal protein S13: M
30S ribosomal protein S14: N
30S ribosomal protein S15: O
30S ribosomal protein S16: P
30S ribosomal protein S17: Q
30S ribosomal protein S18: R
30S ribosomal protein S19: S
30S ribosomal protein S20: T
30S ribosomal protein S21: U
50S ribosomal protein L2: X
50S ribosomal protein L3: Y
50S ribosomal protein L4: Z
50S ribosomal protein L5: 0
50S ribosomal protein L6: 1
50S ribosomal protein L9: 2
50S ribosomal protein L13: 3
50S ribosomal protein L14: 4
50S ribosomal protein L15: 5
50S ribosomal protein L16: 6
50S ribosomal protein L17: 7
50S ribosomal protein L18: 8
50S ribosomal protein L19: 9
50S ribosomal protein L20: a
50S ribosomal protein L21: b
50S ribosomal protein L22: c
50S ribosomal protein L23: d
50S ribosomal protein L24: e
50S ribosomal protein L25: f
50S ribosomal protein L27: g
50S ribosomal protein L28: h
50S ribosomal protein L29: i
50S ribosomal protein L30: j
50S ribosomal protein L31: k
50S ribosomal protein L32: l
50S ribosomal protein L33: m
50S ribosomal protein L34: n
50S ribosomal protein L35: o
50S ribosomal protein L36: p - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
S021C
S031D
S041E
S051F
S061G
S071H
S081I
S091J
S101K
S111L
S121M
S131N
S141O
S151P
S161Q
S171R
S181S
S191T
S201U
S211X
L021Y
L031Z
L0410
L0511
L0612
L0913
L1314
L1415
L1516
L1617
L1718
L1819
L191a
L201b
L211c
L221d
L231e
L241f
L251g
L271h
L281i
L291j
L301k
L311l
L321m
L331n
L341o
L351p
L361
SMTL ID : 7zta.1
Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide
30S ribosomal protein S2
30S ribosomal protein S3
30S ribosomal protein S4
30S ribosomal protein S5
30S ribosomal protein S6, fully modified isoform
30S ribosomal protein S7
30S ribosomal protein S8
30S ribosomal protein S9
30S ribosomal protein S10
30S ribosomal protein S11
30S ribosomal protein S12
30S ribosomal protein S13
30S ribosomal protein S14
30S ribosomal protein S15
30S ribosomal protein S16
30S ribosomal protein S17
30S ribosomal protein S18
30S ribosomal protein S19
30S ribosomal protein S20
30S ribosomal protein S21
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
50S ribosomal protein L6
50S ribosomal protein L9
50S ribosomal protein L13
50S ribosomal protein L14
50S ribosomal protein L15
50S ribosomal protein L16
50S ribosomal protein L17
50S ribosomal protein L18
50S ribosomal protein L19
50S ribosomal protein L20
50S ribosomal protein L21
50S ribosomal protein L22
50S ribosomal protein L23
50S ribosomal protein L24
50S ribosomal protein L25
50S ribosomal protein L27
50S ribosomal protein L28
50S ribosomal protein L29
50S ribosomal protein L30
50S ribosomal protein L31
50S ribosomal protein L32
50S ribosomal protein L33
50S ribosomal protein L34
50S ribosomal protein L35
50S ribosomal protein L36
Related Entries With Identical Sequence
1b75.1 | 1d6k.1 | 1dfu.1 | 1s03.1 | 1s03.2 | 2j28.1 | 2ykr.1 | 3bbx.1 | 3j5l.1 | 3j5s.1 | 3j7z.1 | 3j8g.1 | 3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 487d.1 | 4a2i.1 | 4a5u.1 | 4adv.1 | 4csu.1 | 4pe9.1 | 4pea.1 | 4peb.1 | 4pec.1 more...less...4tol.1 | 4tom.1 | 4ton.1 | 4too.1 | 4tou.1 | 4tov.1 | 4tow.1 | 4tox.1 | 4tp0.1 | 4tp1.1 | 4tp2.1 | 4tp3.1 | 4tp4.1 | 4tp5.1 | 4tp6.1 | 4tp7.1 | 4tp8.1 | 4tp9.1 | 4tpa.1 | 4tpb.1 | 4tpc.1 | 4tpd.1 | 4tpe.1 | 4tpf.1 | 4u1u.1 | 4u1u.2 | 4u1v.1 | 4u1v.2 | 4u20.1 | 4u20.2 | 4u24.1 | 4u24.2 | 4u25.1 | 4u25.2 | 4u26.1 | 4u26.2 | 4u27.1 | 4u27.2 | 4uy8.1 | 4v4h.1 | 4v4h.2 | 4v4q.1 | 4v4q.2 | 4v4v.1 | 4v4w.1 | 4v50.1 | 4v50.2 | 4v52.1 | 4v52.2 | 4v53.1 | 4v53.2 | 4v54.1 | 4v54.2 | 4v55.1 | 4v55.2 | 4v56.1 | 4v56.2 | 4v57.1 | 4v57.2 | 4v5b.1 | 4v5b.2 | 4v5h.1 | 4v5y.1 | 4v5y.2 | 4v64.1 | 4v64.2 | 4v65.1 | 4v66.1 | 4v69.1 | 4v6c.1 | 4v6c.2 | 4v6d.1 | 4v6d.2 | 4v6e.1 | 4v6e.2 | 4v6k.1 | 4v6l.1 | 4v6m.1 | 4v6n.1 | 4v6o.1 | 4v6p.1 | 4v6q.1 | 4v6r.1 | 4v6s.1 | 4v6t.1 | 4v6v.1 | 4v6y.1 | 4v6z.1 | 4v70.1 | 4v71.1 | 4v72.1 | 4v73.1 | 4v74.1 | 4v75.1 | 4v76.1 | 4v77.1 | 4v78.1 | 4v79.1 | 4v7a.1 | 4v7b.1 | 4v7c.1 | 4v7d.1 | 4v7i.1 | 4v7s.1 | 4v7s.2 | 4v7t.1 | 4v7t.2 | 4v7u.1 | 4v7u.2 | 4v7v.1 | 4v7v.2 | 4v85.1 | 4v89.1 | 4v9c.1 | 4v9c.2 | 4v9d.1 | 4v9d.2 | 4v9o.1 | 4v9o.2 | 4v9o.3 | 4v9o.4 | 4v9p.1 | 4v9p.2 | 4v9p.3 | 4v9p.4 | 4wao.1 | 4wap.1 | 4waq.1 | 4waq.2 | 4war.1 | 4wf1.1 | 4wf1.2 | 4woi.1 | 4woi.2 | 4www.1 | 4www.2 | 4ybb.1 | 4ybb.2 | 5ady.1 | 5afi.1 | 5aka.1 | 5gad.1 | 5gae.1 | 5gaf.1 | 5gag.1 | 5gah.1 | 5h5u.1 | 5iqr.1 | 5it8.1 | 5it8.2 | 5j5b.1 | 5j5b.2 | 5j7l.1 | 5j7l.2 | 5j88.1 | 5j88.2 | 5j8a.1 | 5j8a.2 | 5j91.1 | 5j91.2 | 5jc9.1 | 5jc9.2 | 5jte.1 | 5ju8.1 | 5kcr.1 | 5kcs.1 | 5kps.1 | 5kpv.1 | 5kpw.1 | 5kpx.1 | 5l3p.1 | 5lza.1 | 5lzb.1 | 5lzc.1 | 5lzd.1 | 5lze.1 | 5lzf.1 | 5mdv.1 | 5mdw.1 | 5mdy.1 | 5mdz.1 | 5me0.1 | 5me1.1 | 5mgp.1 | 5my1.1 | 5nco.1 | 5no2.1 | 5no3.1 | 5no4.1 | 5np6.1 | 5nwy.1 | 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