SMTL ID : 8bb3.1

Structure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with PEG linker (conformation #1)

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
15 x SCN: THIOCYANATE ION(Non-functional Binders)
13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
1 x Q3X: ~{N}-[5-[4-[2-[2-[2-[2-[3-[[3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-3-oxidanylidene-propoxy]ethoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanylidene-4-(trifluoromethyl)-3~{H}-pyridine-3-carboxamide(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kraemer, A. et al., Structure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with PEG linker (conformation #1). To Be Published
Release Date
2022-11-09
Peptides
Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C
WD repeat-containing protein 5: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
J
B
K
C
L
D
B

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

WD repeat-containing protein 5

Related Entries With Identical Sequence

1lqb.1 | 1lqb.2 | 3ztd.1 | 3ztd.2 | 3ztd.3 | 3ztd.4 | 4awj.1 | 4awj.2 | 4awj.3 | 4awj.4 | 4b95.1 | 4b95.2 | 4b95.3 | 4b95.4 | 4b9k.1 | 4b9k.2 | 4b9k.3 | 4b9k.4 | 4bks.1 | 4bks.2 | 4bks.3 | 4bks.4 | 4bkt.1 | 4bkt.2 | 4bkt.3 | 4bkt.4 | 4w9c.1 | 4w9c.2 | 4w9c.3 | 4w9c.4  more...