- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.08 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 29 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
- 3 x HY0: HYGROMYCIN B VARIANT(Non-functional Binders)(Non-covalent)
HY0.3: 10 residues within 4Å:- Chain A: C.1403, C.1404, G.1405, U.1406, G.1494, U.1495, C.1496, G.1497, U.1498
- Ligands: K.83
No protein-ligand interaction detected (PLIP)HY0.4: 13 residues within 4Å:- Chain A: C.658, U.659, C.660, G.661, U.662, G.664, G.666, U.740, G.741, G.742, A.743
- Chain J: S.2
- Ligands: K.84
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:S.2
HY0.5: 10 residues within 4Å:- Chain A: G.670, G.671, U.672, A.673, A.715, A.716, U.717, C.735, C.736
- Ligands: K.82
No protein-ligand interaction detected (PLIP)- 1 x 5I0: [(2~{S},3~{S},4~{S},5~{R},6~{S})-2-[(2~{R},3~{R},4~{R},5~{S})-2-[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2,4-bis[[azaniumylidene(azanyl)methyl]amino]-3,5,6-tris(oxidanyl)cyclohexyl]oxy-4-[bis(oxidanyl)methyl]-5-methyl-4-oxidanyl-oxolan-3-yl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]-methyl-azanium(Non-covalent)
- 1 x SCM: SPECTINOMYCIN(Non-covalent)
- 55 x MG: MAGNESIUM ION(Non-functional Binders)
MG.8: 3 residues within 4Å:- Chain A: C.1069, U.1085, G.1094
No protein-ligand interaction detected (PLIP)MG.9: 1 residues within 4Å:- Chain A: G.1077
No protein-ligand interaction detected (PLIP)MG.10: 4 residues within 4Å:- Chain A: A.1067, G.1068, G.1094, G.1387
No protein-ligand interaction detected (PLIP)MG.11: 5 residues within 4Å:- Chain A: G.1084, U.1085, U.1086, G.1099, C.1100
No protein-ligand interaction detected (PLIP)MG.12: 2 residues within 4Å:- Chain A: U.1095, G.1108
No protein-ligand interaction detected (PLIP)MG.13: 3 residues within 4Å:- Chain A: C.576, G.577, C.578
No protein-ligand interaction detected (PLIP)MG.14: 2 residues within 4Å:- Chain A: C.330, C.352
No protein-ligand interaction detected (PLIP)MG.15: 2 residues within 4Å:- Chain A: G.111, G.112
No protein-ligand interaction detected (PLIP)MG.16: 1 residues within 4Å:- Chain A: A.547
No protein-ligand interaction detected (PLIP)MG.17: 4 residues within 4Å:- Chain A: G.894, G.895, U.904, U.905
No protein-ligand interaction detected (PLIP)MG.18: 2 residues within 4Å:- Chain A: U.692, C.797
No protein-ligand interaction detected (PLIP)MG.19: 1 residues within 4Å:- Chain A: G.362
No protein-ligand interaction detected (PLIP)MG.20: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.21: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.22: 2 residues within 4Å:- Chain A: A.554, U.555
No protein-ligand interaction detected (PLIP)MG.23: 1 residues within 4Å:- Chain A: G.324
No protein-ligand interaction detected (PLIP)MG.24: 3 residues within 4Å:- Chain A: U.291, U.304, G.305
No protein-ligand interaction detected (PLIP)MG.25: 1 residues within 4Å:- Chain A: A.768
No protein-ligand interaction detected (PLIP)MG.26: 5 residues within 4Å:- Chain A: U.1498, A.1499, A.1500, G.1504, G.1505
No protein-ligand interaction detected (PLIP)MG.27: 3 residues within 4Å:- Chain A: A.572, A.573, A.574
No protein-ligand interaction detected (PLIP)MG.28: 1 residues within 4Å:- Chain A: A.814
No protein-ligand interaction detected (PLIP)MG.29: 2 residues within 4Å:- Chain A: G.858, G.869
No protein-ligand interaction detected (PLIP)MG.30: 3 residues within 4Å:- Chain A: A.559, A.560, U.562
No protein-ligand interaction detected (PLIP)MG.31: 1 residues within 4Å:- Chain A: C.355
No protein-ligand interaction detected (PLIP)MG.32: 1 residues within 4Å:- Chain A: G.588
No protein-ligand interaction detected (PLIP)MG.33: 1 residues within 4Å:- Ligands: K.1
No protein-ligand interaction detected (PLIP)MG.34: 3 residues within 4Å:- Chain A: U.508, A.509, A.510
No protein-ligand interaction detected (PLIP)MG.35: 2 residues within 4Å:- Chain A: A.608, A.609
No protein-ligand interaction detected (PLIP)MG.36: 3 residues within 4Å:- Chain A: A.116, G.117, G.289
No protein-ligand interaction detected (PLIP)MG.37: 2 residues within 4Å:- Chain A: A.109, G.331
No protein-ligand interaction detected (PLIP)MG.38: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.39: 2 residues within 4Å:- Chain A: A.1433, G.1435
No protein-ligand interaction detected (PLIP)MG.40: 4 residues within 4Å:- Chain A: U.516, G.517, A.532, A.533
No protein-ligand interaction detected (PLIP)MG.41: 6 residues within 4Å:- Chain A: G.257, G.258, G.259, G.266, C.267, U.268
No protein-ligand interaction detected (PLIP)MG.42: 1 residues within 4Å:- Chain A: G.21
No protein-ligand interaction detected (PLIP)MG.43: 4 residues within 4Å:- Chain A: A.595, A.596, G.597, U.598
No protein-ligand interaction detected (PLIP)MG.44: 2 residues within 4Å:- Chain A: A.782, A.794
No protein-ligand interaction detected (PLIP)MG.45: 1 residues within 4Å:- Chain A: G.21
No protein-ligand interaction detected (PLIP)MG.46: 3 residues within 4Å:- Chain A: A.179, U.180, A.195
No protein-ligand interaction detected (PLIP)MG.47: 4 residues within 4Å:- Chain A: C.58, A.59, C.386, U.387
No protein-ligand interaction detected (PLIP)MG.48: 1 residues within 4Å:- Chain A: G.100
No protein-ligand interaction detected (PLIP)MG.49: 3 residues within 4Å:- Chain A: A.174, C.175, A.197
No protein-ligand interaction detected (PLIP)MG.50: 4 residues within 4Å:- Chain A: G.297, G.299, G.557, G.558
No protein-ligand interaction detected (PLIP)MG.51: 1 residues within 4Å:- Chain A: A.572
No protein-ligand interaction detected (PLIP)MG.52: 1 residues within 4Å:- Chain A: C.576
No protein-ligand interaction detected (PLIP)MG.53: 2 residues within 4Å:- Chain A: C.580, C.758
No protein-ligand interaction detected (PLIP)MG.54: 4 residues within 4Å:- Chain A: C.817, G.818, U.1527, U.1528
No protein-ligand interaction detected (PLIP)MG.55: 3 residues within 4Å:- Chain A: U.891, A.892, A.906
No protein-ligand interaction detected (PLIP)MG.56: 2 residues within 4Å:- Chain A: G.1417, G.1482
No protein-ligand interaction detected (PLIP)MG.57: 5 residues within 4Å:- Chain A: A.1500, G.1505, A.1507, A.1508
- Ligands: K.70
No protein-ligand interaction detected (PLIP)MG.58: 1 residues within 4Å:- Ligands: 5I0.6
No protein-ligand interaction detected (PLIP)MG.59: 2 residues within 4Å:- Chain A: G.669, A.807
No protein-ligand interaction detected (PLIP)MG.85: 5 residues within 4Å:- Chain A: C.1501, A.1502, G.1504, A.1507, A.1508
No protein-ligand interaction detected (PLIP)MG.86: 2 residues within 4Å:- Chain A: A.780, G.800
No protein-ligand interaction detected (PLIP)MG.87: 4 residues within 4Å:- Chain A: G.666, G.667, C.739, U.740
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paternoga, H. et al., Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol. (2023)
- Release Date
- 2023-07-26
- Peptides
- 30S ribosomal protein S2: B
Small ribosomal subunit protein uS3: C
Small ribosomal subunit protein uS4: D
Small ribosomal subunit protein uS5: E
Small ribosomal subunit protein bS6, non-modified isoform: F
Small ribosomal subunit protein uS8: G
Small ribosomal subunit protein uS11: H
Small ribosomal subunit protein uS12: I
Small ribosomal subunit protein uS15: J
30S ribosomal protein S16: K
Small ribosomal subunit protein uS17: L
Small ribosomal subunit protein bS18: M
30S ribosomal protein S20: N
Small ribosomal subunit protein bS21: O - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
BC
CD
DE
EF
FG
HH
KI
LJ
OK
PL
QM
RN
TO
U
SMTL ID : 8cai.1
Streptomycin and Hygromycin B bound to the 30S body
30S ribosomal protein S2
Small ribosomal subunit protein uS3
Small ribosomal subunit protein uS4
Small ribosomal subunit protein uS5
Small ribosomal subunit protein bS6, non-modified isoform
Small ribosomal subunit protein uS8
Small ribosomal subunit protein uS11
Small ribosomal subunit protein uS12
Small ribosomal subunit protein uS15
30S ribosomal protein S16
Small ribosomal subunit protein uS17
Small ribosomal subunit protein bS18
30S ribosomal protein S20
Small ribosomal subunit protein bS21
Related Entries With Identical Sequence
2ykr.1 | 3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 4a2i.1 | 4adv.1 | 4pe9.1 | 4pea.1 | 4tol.1 | 4ton.1 | 4tou.1 | 4tow.1 | 4tp0.1 | 4tp2.1 | 4tp4.1 | 4tp6.1 | 4tp8.1 | 4tpa.1 | 4tpc.1 | 4tpe.1 | 4u1u.1 | 4u1u.2 | 4u1v.1 | 4u1v.2 more...less...4u20.1 | 4u20.2 | 4u24.1 | 4u24.2 | 4u25.1 | 4u25.2 | 4u26.1 | 4u26.2 | 4u27.1 | 4u27.2 | 4v4h.1 | 4v4h.2 | 4v4q.1 | 4v4q.2 | 4v50.1 | 4v50.2 | 4v52.1 | 4v52.2 | 4v53.1 | 4v53.2 | 4v54.1 | 4v54.2 | 4v55.1 | 4v55.2 | 4v56.1 | 4v56.2 | 4v57.1 | 4v57.2 | 4v5b.1 | 4v5b.2 | 4v5y.1 | 4v5y.2 | 4v64.1 | 4v64.2 | 4v65.1 | 4v66.1 | 4v6c.1 | 4v6c.2 | 4v6d.1 | 4v6d.2 | 4v6e.1 | 4v6e.2 | 4v6k.1 | 4v6l.1 | 4v6m.1 | 4v6n.1 | 4v6o.1 | 4v6p.1 | 4v6q.1 | 4v6r.1 | 4v6s.1 | 4v6t.1 | 4v6v.1 | 4v6y.1 | 4v6z.1 | 4v70.1 | 4v71.1 | 4v72.1 | 4v73.1 | 4v74.1 | 4v75.1 | 4v76.1 | 4v77.1 | 4v78.1 | 4v79.1 | 4v7a.1 | 4v7b.1 | 4v7c.1 | 4v7d.1 | 4v7i.1 | 4v7s.1 | 4v7t.1 | 4v7u.1 | 4v7u.2 | 4v7v.1 | 4v85.1 | 4v89.1 | 4v9c.1 | 4v9c.2 | 4v9d.1 | 4v9d.2 | 4v9o.1 | 4v9o.2 | 4v9o.3 | 4v9o.4 | 4v9p.1 | 4v9p.2 | 4v9p.3 | 4v9p.4 | 4wao.1 | 4waq.1 | 4waq.2 | 4wf1.1 | 4wf1.2 | 4woi.1 | 4woi.2 | 4www.1 | 4www.2 | 4ybb.1 | 4ybb.2 | 5afi.1 | 5h5u.1 | 5iqr.1 | 5it8.1 | 5it8.2 | 5j5b.1 | 5j5b.2 | 5j7l.1 | 5j7l.2 | 5j88.1 | 5j88.2 | 5j8a.1 | 5j8a.2 | 5j91.1 | 5j91.2 | 5jc9.1 | 5jc9.2 | 5jte.1 | 5ju8.1 | 5kcr.1 | 5kcs.1 | 5kps.1 | 5kpv.1 | 5kpw.1 | 5kpx.1 | 5l3p.1 | 5lza.1 | 5lzb.1 | 5lzc.1 | 5lzd.1 | 5lze.1 | 5lzf.1 | 5mdv.1 | 5mdw.1 | 5mdy.1 | 5mdz.1 | 5me0.1 | 5me1.1 | 5mgp.1 | 5my1.1 | 5no2.1 | 5no3.1 | 5no4.1 | 5np6.1 | 5nwy.1 | 5o2r.1 | 5u4i.1 | 5u4j.1 | 5u9f.1 | 5u9g.1 | 5uyk.1 | 5uyl.1 | 5uym.1 | 5uyn.1 | 5uyp.1 | 5uyq.1 | 5uz4.1 | 5wdt.1 | 5we4.1 | 5we6.1 | 5wf0.1 | 5wfk.1 | 5wfs.1 | 6awb.1 | 6awc.1 | 6awd.1 | 6bu8.1 | 6by1.1 | 6by1.2 | 6c4i.1 | 6dnc.1 | 6enf.1 | 6enj.1 | 6enu.1 | 6gwt.1 | 6gxm.1 | 6gxn.1 | 6gxo.1 | 6gxp.1 | 6h4n.1 | 6h58.44 | 6h58.96 | 6hrm.1 | 6i7v.15 | 6i7v.35 | 6lkq.1 | 6o7k.1 | 6o9j.1 | 6o9k.1 | 6ofx.1 | 6og7.1 | 6ogf.1 | 6ogg.1 | 6ogi.1 | 6om6.1 | 6ore.1 | 6orl.1 | 6osk.1 | 6osq.1 | 6ost.1 | 6ot3.1 | 6ouo.1 | 6q98.1 | 6q9a.1 | 6szs.1 | 6tbv.1 | 6tc3.1 | 6vwl.1 | 6vwm.1 | 6vwn.1 | 6vyx.12 | 6vyx.13 | 6vyx.14 | 6vyx.15 | 6vyx.17 | 6vyx.18 | 6vyx.19 | 6vyx.22 | 6vyx.28 | 6vyx.29 | 6vyx.30 | 6vz3.29 | 6w6k.1 | 6w77.1 | 6w7m.1 | 6w7n.1 | 6w7w.1 | 6wd0.1 | 6wd1.1 | 6wd2.1 | 6wd3.1 | 6wd4.1 | 6wd5.1 | 6wd6.1 | 6wd7.1 | 6wd8.1 | 6wd9.1 | 6wda.1 | 6wdb.1 | 6wdc.1 | 6wdd.1 | 6wde.1 | 6wdf.1 | 6wdg.1 | 6wdh.1 | 6wdi.1 | 6wdj.1 | 6wdk.1 | 6wdl.1 | 6wdm.1 | 6wnv.1 | 6wnw.1 | 6xe0.1 | 6xza.1 | 6xzb.1 | 6y69.1 | 6ysr.1 | 6yss.1 | 6yst.1 | 6ysu.1 | 6ztj.1 | 6ztj.2 | 6ztj.3 | 6ztj.7 | 6ztj.11 | 6ztj.14 | 6ztj.15 | 6ztj.16 | 6ztj.17 | 6ztj.19 | 6ztj.20 | 6ztl.1 | 6ztm.1 | 6ztn.1 | 6ztn.2 | 6ztn.3 | 6ztn.7 | 6ztn.11 | 6ztn.14 | 6ztn.15 | 6ztn.16 | 6ztn.17 | 6ztn.19 | 6ztn.20 | 6zto.1 | 6ztp.1 | 6zu1.1 | 7abz.1 | 7acj.1 | 7acr.1 | 7af3.1 | 7af5.1 | 7af8.1 | 7afa.1 | 7afd.1 | 7afh.1 | 7afi.1 | 7afk.1 | 7afl.1 | 7afn.1 | 7afo.1 | 7b5k.1 | 7bod.1 | 7boe.1 | 7bof.1 | 7bog.1 | 7boh.1 | 7boi.1 | 7cpj.1 | 7d6z.1 | 7d80.1 | 7jss.1 | 7jsw.1 | 7jsz.1 | 7jt1.1 | 7jt2.1 | 7jt3.1 | 7k00.1 | 7k50.1 | 7k51.1 | 7k52.1 | 7k53.1 | 7k54.1 | 7k55.1 | 7lv0.1 | 7m5d.1 | 7n1p.1 | 7n2c.1 | 7n2u.1 | 7n2v.1 | 7n30.1 | 7n31.1 | 7nar.1 | 7nas.1 | 7nat.1 | 7nau.1 | 7nav.1 | 7nax.1 | 7nso.1 | 7nsp.1 | 7nsq.1 | 7nwt.1 | 7nww.1 | 7o19.1 | 7o1a.1 | 7o1c.1 | 7o5h.1 | 7oe0.1 | 7oe1.1 | 7oi0.1 | 7oif.1 | 7oig.1 | 7oii.1 | 7oiz.1 | 7oj0.1 | 7ot5.1 | 7otc.1 | 7p3k.1 | 7pjs.1 | 7pjt.1 | 7pju.1 | 7pjv.1 | 7pjw.1 | 7pjx.1 | 7pjy.1 | 7pjz.1 | 7q4k.1 | 7qg8.1 | 7qgh.1 | 7qgn.1 | 7qgr.1 | 7s1g.1 | 7s1h.1 | 7s1i.1 | 7s1j.1 | 7s1k.1 | 7sa4.1 | 7ss9.1 | 7ssd.1 | 7ssl.1 | 7ssn.1 | 7sso.1 | 7ssw.1 | 7st2.1 | 7st6.1 | 7st7.1 | 7tos.1 | 7ug7.1 | 7uph.1 | 7y7c.1 | 7y7d.1 | 7y7e.1 | 7y7f.1 | 7y7g.1 | 7y7h.1 | 7zta.1 | 8a3l.1 | 8akn.1 | 8am9.1 | 8aye.1 | 8b0x.1 | 8b7y.1 | 8bd5.1 | 8bf7.1 | 8bge.1 | 8bgh.1 | 8bh4.1 | 8bhj.1 | 8bhl.1 | 8bhn.1 | 8bhp.1 | 8bil.1 | 8bim.1 | 8ca7.1 | 8caz.1 | 8cep.1 | 8cf1.1 | 8cf8.1 | 8cgi.1 | 8cgj.1 | 8cgr.1 | 8cgu.1 | 8ea3.1 | 8ea4.1 | 8eiu.1 | 8ekc.1 | 8emm.1 | 8eyq.1 | 8eyt.1 | 8fiz.1 | 8fto.1 | 8fzd.1 | 8fze.1 | 8fzf.1 | 8fzg.1 | 8fzh.1 | 8fzi.1 | 8fzj.1 | 8g2u.1 | 8g31.1 | 8g34.1 | 8g38.1 | 8g6w.1 | 8g7p.1 | 8g7q.1 | 8g7r.1 | 8g7s.1 | 8ghu.1 | 8hsp.1 | 8htz.1 | 8hu1.1 | 8ifb.1 | 8ifc.1 | 8jsg.1 | 8jsh.1 | 8k3o.1 | 8k4e.1 | 8p16.1 | 8p17.1 | 8p18.1 | 8peg.1 | 8phj.1 | 8pkl.1 | 8pva.1 | 8q4f.1 | 8qbt.1 | 8qk7.1 | 8qoa.1 | 8r6c.1 | 8r8m.1 | 8syl.1 | 8t5d.1 | 8t5h.1 | 8vs9.1 | 8vsa.1 | 8yuo.1 | 8yup.1 | 8yuq.1 | 8yur.1 | 8yus.1 | 9ax7.1 | 9ax8.1 | 9cg5.1 | 9cg6.1 | 9cg7.1 | 9fbv.1 | 9gr1.1 | 9gup.1 | 9guq.1 | 9gus.1 | 9gut.1 | 9guu.1 | 9guv.1 | 9guw.1 | 9gux.1