SMTL ID : 8cep.1

Kasugamycin bound to the 30S body

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 2.04 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
5 x KBE- DPP- UAL- MYN- DPP- SER: Capreomycin IA(Non-functional Binders)
25 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)
1 x KSG: (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE(Non-functional Binders)
54 x MG: MAGNESIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Paternoga, H. et al., Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol. (2023)
Release Date
2023-07-19
Peptides
Small ribosomal subunit protein uS4: B
Small ribosomal subunit protein uS5: C
Small ribosomal subunit protein bS6, non-modified isoform: D
Small ribosomal subunit protein uS8: E
Small ribosomal subunit protein uS11: F
Small ribosomal subunit protein uS12: G
Small ribosomal subunit protein uS15: H
30S ribosomal protein S16: I
Small ribosomal subunit protein uS17: J
Small ribosomal subunit protein bS18: K
30S ribosomal protein S20: L
Small ribosomal subunit protein bS21: M
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
D
C
E
D
F
E
H
F
K
G
L
H
O
I
P
J
Q
K
R
L
T
M
U

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

Small ribosomal subunit protein bS6, non-modified isoform

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

Small ribosomal subunit protein uS15

30S ribosomal protein S16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

30S ribosomal protein S20

Small ribosomal subunit protein bS21

Related Entries With Identical Sequence

2ykr.1 | 3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 4a2i.1 | 4adv.1 | 4pe9.1 | 4pea.1 | 4tol.1 | 4ton.1 | 4tou.1 | 4tow.1 | 4tp0.1 | 4tp2.1 | 4tp4.1 | 4tp6.1 | 4tp8.1 | 4tpa.1 | 4tpc.1 | 4tpe.1 | 4u1u.1 | 4u1u.2 | 4u1v.1 | 4u1v.2  more...