SMTL ID : 8e45.1

E. coli 50S ribosome bound to antibiotic analog SLC17

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

1 x UI6: 2-{[(2S,3R,4S,6R)-2-{[(2R,3S,4R,5R,8R,10R,11R,12S,13S,14R)-2-ethyl-3,4,10-trihydroxy-13-{[(2R,4R,5S,6S)-5-hydroxy-4-methoxy-4,6-dimethyloxan-2-yl]oxy}-3,5,6,8,10,12,14-heptamethyl-15-oxo-1-oxa-6-azacyclopentadecan-11-yl]oxy}-3-hydroxy-6-methyloxan-4-yl](methyl)amino}-N-{[(5S)-3-{(4M)-3-fluoro-4-[(6P)-6-(2-methyl-2H-tetrazol-5-yl)pyridin-3-yl]phenyl}-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamide (non-preferred name)(Non-functional Binders)

UI6.1: 18 residues within 4Å: Chain A: U.746, U.747, A.2058, A.2059, G.2061, A.2062, A.2451, C.2452, A.2503, U.2504, G.2505, U.2506, U.2585, A.2602, U.2609, C.2610, C.2611 Chain H: K.90 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:K.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeon, S.K. et al., SLC collection of antibiotic analogs. To Be Published

Release Date

2023-06-28

Peptides

50S ribosomal protein L2: C
50S ribosomal protein L15: D
50S ribosomal protein L4: E
50S ribosomal protein L3: F
50S ribosomal protein L13: G
50S ribosomal protein L22: H
50S ribosomal protein L32: I
50S ribosomal protein L34: J

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
K

D
L

E
M

F
N

G
O

H
P

I
Q

J
R

50S ribosomal protein L2

50S ribosomal protein L15

50S ribosomal protein L4

50S ribosomal protein L3

50S ribosomal protein L13

50S ribosomal protein L22

50S ribosomal protein L32

50S ribosomal protein L34

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