8ztv.1 | SWISS-MODEL Template Library

SMTL ID : 8ztv.1

70S ribosome arrested by PepNL with RF2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x A- U- A- G- A- C- U- G- A: mRNA

1 x C- A: RNA (5'-R(P*CP*A)-3')

301 x MG: MAGNESIUM ION

47 x K: POTASSIUM ION

7 x SPD: SPERMIDINE

1 x PUT: 1,4-DIAMINOBUTANE

2 x ZN: ZINC ION

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ando, Y. et al., A mini-hairpin shaped nascent peptide blocks translation termination by a distinct mechanism. Nat Commun (2025)

Release Date

2025-03-19

Peptides

30S ribosomal protein S2: B
30S ribosomal protein S3: C
30S ribosomal protein S4: D
30S ribosomal protein S5: E
30S ribosomal protein S6, fully modified isoform: F
30S ribosomal protein S7: G
30S ribosomal protein S8: H
30S ribosomal protein S9: I
30S ribosomal protein S10: J
30S ribosomal protein S11: K
30S ribosomal protein S12: L
30S ribosomal protein S13: M
30S ribosomal protein S14: N
30S ribosomal protein S15: O
30S ribosomal protein S16: P
30S ribosomal protein S17: Q
30S ribosomal protein S18: R
30S ribosomal protein S19: S
30S ribosomal protein S20: T
30S ribosomal protein S21: U
Peptide chain release factor 2: V
PepNL: W
Large ribosomal subunit protein uL2: 0
50S ribosomal protein L3: 1
50S ribosomal protein L4: 2
Large ribosomal subunit protein uL5: 3
Large ribosomal subunit protein uL6: 4
50S ribosomal protein L9: 5
50S ribosomal protein L13: 6
50S ribosomal protein L14: 7
50S ribosomal protein L15: 8
50S ribosomal protein L16: 9
Large ribosomal subunit protein bL17: a
Large ribosomal subunit protein uL18: b
Large ribosomal subunit protein bL19: c
Large ribosomal subunit protein bL20: d
50S ribosomal protein L21: e
50S ribosomal protein L22: f
Large ribosomal subunit protein uL23: g
50S ribosomal protein L24: h
50S ribosomal protein L25: i
Large ribosomal subunit protein bL27: j
Large ribosomal subunit protein bL28: k
Large ribosomal subunit protein uL29: l
Large ribosomal subunit protein uL30: m
Large ribosomal subunit protein bL32: n
Large ribosomal subunit protein bL33: o
50S ribosomal protein L34: p
Large ribosomal subunit protein bL35: q
50S ribosomal protein L36: r
50S ribosomal protein L31: s

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

0
c

1
d

2
e

3
f

4
g

5
h

6
i

7
j

8
k

9
l

a
m

b
n

c
o

d
p

e
q

f
r

g
s

h
t

i
u

j
v

k
w

l
x

m
y

n
z

o
0

p
1

q
2

r
3

s
4

30S ribosomal protein S2

30S ribosomal protein S3

30S ribosomal protein S4

30S ribosomal protein S5

30S ribosomal protein S6, fully modified isoform

30S ribosomal protein S7

30S ribosomal protein S8

30S ribosomal protein S9

30S ribosomal protein S10

30S ribosomal protein S11

30S ribosomal protein S12

30S ribosomal protein S13

30S ribosomal protein S14

30S ribosomal protein S15

30S ribosomal protein S16

30S ribosomal protein S17

30S ribosomal protein S18

30S ribosomal protein S19

30S ribosomal protein S20

30S ribosomal protein S21

Peptide chain release factor 2

PepNL

Large ribosomal subunit protein uL2

50S ribosomal protein L3

50S ribosomal protein L4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

50S ribosomal protein L9

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

50S ribosomal protein L16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

50S ribosomal protein L21

50S ribosomal protein L22

Large ribosomal subunit protein uL23

50S ribosomal protein L24

50S ribosomal protein L25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL33

50S ribosomal protein L34

Large ribosomal subunit protein bL35

50S ribosomal protein L36

50S ribosomal protein L31

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